Table 1.
AA | Codon | TTSuV1 | TTSuV2 | Sus scrofa | Sus scrofa domestica |
---|---|---|---|---|---|
F | UUU | 1.1 | 1.2 | 0.79 | 0.59 |
UUC | 0.9 | 0.8 | 1.21 | 1.41 | |
L | UUA | 0.93 | 1.73 | 0.32 | 0.3 |
UUG | 0.32 | 0.21 | 0.67 | 0.49 | |
CUU | 0.79 | 0.57 | 1.35 | 1.41 | |
CUC | 0.99 | 1.51 | 1.35 | 1.41 | |
CUA | 1.74 | 1.68 | 0.33 | 0.28 | |
CUG | 1.22 | 0.29 | 2.68 | 2.92 | |
I | AUU | 0.84 | 0.54 | 0.91 | 1.22 |
AUC | 0.6 | 0.49 | 1.67 | 1.45 | |
AUA | 1.56 | 1.97 | 0.42 | 0.34 | |
V | GUU | 0.55 | 0.65 | 0.57 | 0.34 |
GUC | 0.6 | 0.6 | 1.07 | 1.45 | |
GUA | 1.81 | 2.24 | 0.34 | 0.17 | |
GUG | 1.04 | 0.51 | 2.03 | 2.04 | |
S | UCU | 0.96 | 0.71 | 0.99 | 1.1 |
UCC | 0.83 | 0.6 | 1.5 | 1 | |
UCA | 1.28 | 1.51 | 0.73 | 2.45 | |
UCG | 0.59 | 0.15 | 0.39 | 0.55 | |
AGU | 1.61 | 1.02 | 0.77 | 0.25 | |
AGC | 0.73 | 2 | 1.62 | 0.66 | |
P | CCU | 0.6 | 1.57 | 1.05 | 0.84 |
CCC | 0.86 | 0.42 | 1.46 | 1.59 | |
CCA | 1.9 | 0.64 | 0.94 | 0.91 | |
CCG | 0.65 | 0.71 | 0.56 | 0.66 | |
T | ACU | 0.69 | 2.33 | 0.83 | 0.77 |
ACC | 0.65 | 0.31 | 1.68 | 1.2 | |
ACA | 2.08 | 1.14 | 0.92 | 1.62 | |
ACG | 0.58 | 0.48 | 0.57 | 0.41 | |
A | GCU | 0.76 | 2.16 | 0.96 | 0.7 |
GCC | 1.07 | 0.22 | 1.8 | 1.03 | |
GCA | 1.6 | 1.03 | 0.74 | 1.92 | |
GCG | 0.57 | 0.98 | 0.5 | 0.36 | |
Y | UAU | 0.57 | 1.14 | 0.73 | 0.69 |
UAC | 1.43 | 0.86 | 1.27 | 1.31 | |
H | CAU | 0.56 | 0.72 | 0.7 | 0.6 |
CAC | 1.44 | 1.28 | 1.3 | 1.4 | |
Q | CAA | 0.81 | 1.5 | 0.44 | 0.29 |
CAG | 1.19 | 0.5 | 1.56 | 1.71 | |
N | AAU | 0.77 | 0.93 | 0.79 | 0.82 |
AAC | 1.23 | 1.07 | 1.21 | 1.18 | |
K | AAA | 1.38 | 1.6 | 0.76 | 0.91 |
AAG | 0.62 | 0.4 | 1.24 | 1.09 | |
D | GAU | 0.6 | 0.75 | 0.8 | 0.81 |
GAC | 1.4 | 1.25 | 1.2 | 1.19 | |
E | GAA | 1.22 | 1.39 | 0.72 | 1.24 |
GAG | 0.78 | 0.61 | 1.28 | 0.76 | |
C | UGU | 0.88 | 1.3 | 0.79 | 0.81 |
UGC | 1.12 | 0.7 | 1.21 | 1.19 | |
R | CGU | 0.48 | 0.15 | 0.44 | 0.4 |
CGC | 0.88 | 0.95 | 1.31 | 1.09 | |
CGA | 0.82 | 0.64 | 0.6 | 0.27 | |
CGG | 0.3 | 0.52 | 1.29 | 0.77 | |
AGA | 2.8 | 2.95 | 1.12 | 2.75 | |
AGG | 0.71 | 0.79 | 1.23 | 0.71 | |
G | GGU | 0.62 | 0.32 | 0.57 | 0.31 |
GGC | 0.55 | 0.5 | 1.46 | 0.84 | |
GGA | 2.21 | 2.74 | 0.91 | 1.78 | |
GGG | 0.61 | 0.44 | 1.05 | 1.07 |
Note: The most abundant synonymous codons encoding the same amino acid are represented in bold.