Global knockout mutation |
Fig. 1a |
[6] |
Alk2 null |
A2–5 5′-ATGCTAGACCTGGGCAGCCATA-3′ PGK-Mot 5′-CGTGTGTAAGGTGTAGGTG GCC-3′ |
A2–5:PGK-Mot: A2–3 = 2:1:1 |
195 bp (Alk2 null) |
65 °C, 40 cycles |
A2–5 5′-ATGCTAGACCTGGGCAGCCATA-3′ A2–3 5′-CATGCTAGCAGCTCGGAGAAAC-3′ |
|
371 bp (wild type) |
|
Fig. 1b |
[18] |
Alk3 null |
fx3 5′-AGACTGCCTTGGGAAAAGCGC-3′ fx5 3′-GGACTATGGACACACAATGGC-3′ |
fx3:fx5:fx0 = 1:2:1 |
190 bp (Alk3 null) |
65 °C, 40 cycles |
fx5 5′-GGACTATGGACACACAATGGC-3′ fx0 5′-CTCTGAATTTCTAGTCCACATCTGC-3′ |
|
280 bp (wild type) |
|
Fig. 1c |
[7] |
Alk6 null |
Alk6-I 5′-TGGTGAGTGGTTACAACAAGATC AGCA-3′ |
Neo-Al2: Alk6-I: Alk6-E = 1:2:1 |
300 bp (Alk6 null) |
65 °C, 40 cycles |
Neo-Al2 5′-GAAAGAACCAGCTGGGGCTC GAG-3′ |
|
|
|
Alk6-I 5′-TGGTGAGTGGTTACAACAAGATC AGCA-3′ |
|
350 bp (wild type) |
|
Alk6-E 5′-CTCGGCCCAAGATCCTACGTTG-3′ |
|
|
|
Fig. 1d |
[14] |
Bmpr2 null |
A 5′-GCTAAAGCGCATGCTCCAGACTGCC TT-3′ |
Primer A:B:C = 2:1:1 |
260 bp (Bmpr2 null) |
|
C 5′-AGGTTGGCCTGGAACCTGAGGAAATC-3′ |
|
|
|
A 5′-GCTAAAGCGCATGCTCCAGACTGCC TTG-3′ |
|
200 bp (wild type) |
|
B 5′-TCACAGCATGAACATGATGGAGGCGG-3′ |
|
|
|
Fig. 1e |
[16, 32] |
Acvr2a null |
A 5′-TGGGAAGACAATAGCAGGCATGC-3′ |
1:1:1:1 |
900 bp (Acvr2A null) |
70 °C, 30 cycles |
B 5′-GCAGAGTGTGACCCGTACCCAC-3′ |
|
|
|
C 5′-GTTGGTACCCGGAGGTATATGGC-3′ |
|
140 bp (wild type) |
|
D 5′-CCCTTACCATCTGCAGCAGTGCA-3′ |
|
|
|
Acvr2b null |
A 5′-ATGAACTGCAGGACGAGGCAGCG-3′ |
1:1:1:1 |
600 bp (Acvr2B null) |
|
B 5′-GGCGATAGAAGGCGATGCGCTG-3′ |
|
|
|
C 5′-CCGACAGCCCCCACCCTGCTCA-3′ |
|
241 bp (wild type) |
|
D 5′-GGCCCACCAGAGGGGATGGGGG-3′ |
|
|
|
Conditional knockout mutation |
Fig. 2a |
[29] |
Alk2 flox |
Alk217F 5′-CCCCCATTGAAGGTTTAGAG AGAC-3′ |
Alk217F: lk217R2 = 1:1 |
160 + 90 bp (flox) (see
Note 4), 250 bp (wild type) |
65 °C, 40 cycles |
Alk217R2 3′-CTAAGAGCCATGACAGA GGTTG-3′ |
|
|
|
Alk2-recombined |
Alk2RecF 5′-GAATTGCTAGAAGCCCATA GGC-3′ |
Alk2RecF:Alk2WTR: Alk217F = 1:2:1 |
625 bp (recombined) |
60 °C, 40 cycles |
Alk2WTR 5′-TGAGATTGTTCTAGCACTGC CC-3′ |
|
|
|
Alk217F 5′-CCCCCATTGAAGGTTTAGAGA GAC-3′ |
|
530 bp (wild type) |
|
Alk2WTR 5′-TGAGATTGTTCTAGCACTGC CC-3′ |
|
|
|
Fig. 2b |
[8] |
Alk3 flox |
fx2 5′-GCAGCTGCTGCTGCAGCCTCC-3′ |
fx2:fx4 = 1:1 |
230 bp (flox) |
65 °C, 40 cycles |
fx4 3′-TGGCTACAATTTGTCTCATGC-3′ |
|
150 bp (wild type) |
|
Fig. 2b |
|
Alk3-recombined (see
Note 6) |
fx1 5′-GGTTTGGATCTTAACCTTAGG-3′ |
fx1:fx4:BMP2-A: BMP2-B = 1:1:1:1 |
180 bp (recombined) |
55 °C, 40 cycles |
fx4 5′-TGGCTACAATTTGTCTCATGC-3′ |
|
|
|
BMP2-A 5′-AGCATGAACCCTCATGTGTT GG-3′ |
|
322 bp (wild type) |
|
BMP2-B 5′-GTGACATTAGGCTGCT GTAGCA-3′ |
|
|
|
Fig. 2c |
[15] |
Bmpr2 flox |
5F 50-GGCAGACTCTGACTTTGACGCTAG-3′ |
|
315 bp (2loxP and 3loxP) |
60 °C, 40 cycles |
|
C 5′-TTATTGTAAGTACACTGTTGCTGTC-3′ |
|
|
|
|
A 5′-CACACCAGCCTTATACTCTAG ATAC-3′ |
|
260 bp (wild type) |
|
|
6R 5′-CACATATCTGTTATGAAACTTGAG-3′ |
|
350 bp (2loxP) |
|
|
A 5′-CACACCAGCCTTATACTCTAG ATAC-3′ |
|
270 bp (wild type) |
|
|
C 5′-TTATTGTAAGTACACTGTTGCTGTC-3′ |
|
500 bp (1loxP) |
|
Conditional constitutively active transgenic line |
Before recombination |
Fig. 2d |
[12] |
caAlk |
TF41 5′-GTGCTGGTTATTGTGCTGTCTC-3′ |
TF41:TF61:LbnFR1: LbnRev3 = 1:1:1:1 |
580 bp (caAlk transgene) |
65 °C, 40 cycles |
TF61 5′-GACGACAGTATCGGCCTCAGGAA-3′ |
|
|
|
LbnFR1 5′-GAGGACGCAGTCCAGTACCT-3′ |
|
334 bp (Internal control) |
|
LbnRev3 5′-TAGCCTCTGCCTCACGCCCT GC-3′ |
|
|
|
After recombination |
Fig. 2d |
[11] |
caAlk2 |
TF41 (common) 5′-GTGCTGGTTATTGTG CTGTCTC-3′ |
TF41:TF9 = 1:1 |
750 bp (caAlk2 transgene) |
65 °C, 40 cycles |
TF9 (Alk2) 5′-CGAACACTACAGAGAGAAT AATG-3′ |
|
|
|
|
[12] |
caAlk3 |
TF41 (common) 5′-GTGCTGGTTATTGTGC TGTCTC-3′ |
TF41:TF17 = 1:1 |
300 bp (caAlk3 transgene) |
|
TF17 (Alk3) 5′-CGGCGTAGCTGGGCTTTT GGA-3′ |
|
|
|
caAlk6 |
TF41 (common) 5′-GTGCTGGTTATTGTGC TGTCTC-3′ |
TF41:TF25 = 1:1 |
300 bp (caAlk6 transgene) |
|
TF25 (Alk6) 5′-GACATCCAGAGGTGACAA CAG-3′ |
|
|
|