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. Author manuscript; available in PMC: 2020 Jan 1.
Published in final edited form as: Methods Mol Biol. 2019;1891:165–177. doi: 10.1007/978-1-4939-8904-1_12

Table 1.

Primers used for genotyping of different BMP receptors genetically modified mice

Ref Modified gene Primers Primer ratios PCR products Annealing
Global knockout mutation
Fig. 1a [6] Alk2 null A2–5 5′-ATGCTAGACCTGGGCAGCCATA-3′ PGK-Mot 5′-CGTGTGTAAGGTGTAGGTG GCC-3′ A2–5:PGK-Mot: A2–3 = 2:1:1 195 bp (Alk2 null) 65 °C, 40 cycles
A2–5 5′-ATGCTAGACCTGGGCAGCCATA-3′ A2–3 5′-CATGCTAGCAGCTCGGAGAAAC-3′ 371 bp (wild type)
Fig. 1b [18] Alk3 null fx3 5′-AGACTGCCTTGGGAAAAGCGC-3′ fx5 3′-GGACTATGGACACACAATGGC-3′ fx3:fx5:fx0 = 1:2:1 190 bp (Alk3 null) 65 °C, 40 cycles
fx5 5′-GGACTATGGACACACAATGGC-3′ fx0 5′-CTCTGAATTTCTAGTCCACATCTGC-3′ 280 bp (wild type)
Fig. 1c [7] Alk6 null Alk6-I 5′-TGGTGAGTGGTTACAACAAGATC AGCA-3′ Neo-Al2: Alk6-I: Alk6-E = 1:2:1 300 bp (Alk6 null) 65 °C, 40 cycles
Neo-Al2 5′-GAAAGAACCAGCTGGGGCTC GAG-3′
Alk6-I 5′-TGGTGAGTGGTTACAACAAGATC AGCA-3′ 350 bp (wild type)
Alk6-E 5′-CTCGGCCCAAGATCCTACGTTG-3′
Fig. 1d [14] Bmpr2 null A 5′-GCTAAAGCGCATGCTCCAGACTGCC TT-3′ Primer A:B:C = 2:1:1 260 bp (Bmpr2 null)
C 5′-AGGTTGGCCTGGAACCTGAGGAAATC-3′
A 5′-GCTAAAGCGCATGCTCCAGACTGCC TTG-3′ 200 bp (wild type)
B 5′-TCACAGCATGAACATGATGGAGGCGG-3′
Fig. 1e [16, 32] Acvr2a null A 5′-TGGGAAGACAATAGCAGGCATGC-3′ 1:1:1:1 900 bp (Acvr2A null) 70 °C, 30 cycles
B 5′-GCAGAGTGTGACCCGTACCCAC-3′
C 5′-GTTGGTACCCGGAGGTATATGGC-3′ 140 bp (wild type)
D 5′-CCCTTACCATCTGCAGCAGTGCA-3′
Acvr2b null A 5′-ATGAACTGCAGGACGAGGCAGCG-3′ 1:1:1:1 600 bp (Acvr2B null)
B 5′-GGCGATAGAAGGCGATGCGCTG-3′
C 5′-CCGACAGCCCCCACCCTGCTCA-3′ 241 bp (wild type)
D 5′-GGCCCACCAGAGGGGATGGGGG-3′
Conditional knockout mutation
Fig. 2a [29] Alk2 flox Alk217F 5′-CCCCCATTGAAGGTTTAGAG AGAC-3′ Alk217F: lk217R2 = 1:1 160 + 90 bp (flox) (see Note 4), 250 bp (wild type) 65 °C, 40 cycles
Alk217R2 3′-CTAAGAGCCATGACAGA GGTTG-3′
Alk2-recombined Alk2RecF 5′-GAATTGCTAGAAGCCCATA GGC-3′ Alk2RecF:Alk2WTR: Alk217F = 1:2:1 625 bp (recombined) 60 °C, 40 cycles
Alk2WTR 5′-TGAGATTGTTCTAGCACTGC CC-3′
Alk217F 5′-CCCCCATTGAAGGTTTAGAGA GAC-3′ 530 bp (wild type)
Alk2WTR 5′-TGAGATTGTTCTAGCACTGC CC-3′
Fig. 2b [8] Alk3 flox fx2 5′-GCAGCTGCTGCTGCAGCCTCC-3′ fx2:fx4 = 1:1 230 bp (flox) 65 °C, 40 cycles
fx4 3′-TGGCTACAATTTGTCTCATGC-3′ 150 bp (wild type)
Fig. 2b Alk3-recombined (see Note 6) fx1 5′-GGTTTGGATCTTAACCTTAGG-3′ fx1:fx4:BMP2-A: BMP2-B = 1:1:1:1 180 bp (recombined) 55 °C, 40 cycles
fx4 5′-TGGCTACAATTTGTCTCATGC-3′
BMP2-A 5′-AGCATGAACCCTCATGTGTT GG-3′ 322 bp (wild type)
BMP2-B 5′-GTGACATTAGGCTGCT GTAGCA-3′
Fig. 2c [15] Bmpr2 flox 5F 50-GGCAGACTCTGACTTTGACGCTAG-3′ 315 bp (2loxP and 3loxP) 60 °C, 40 cycles
C 5′-TTATTGTAAGTACACTGTTGCTGTC-3′
A 5′-CACACCAGCCTTATACTCTAG ATAC-3′ 260 bp (wild type)
6R 5′-CACATATCTGTTATGAAACTTGAG-3′ 350 bp (2loxP)
A 5′-CACACCAGCCTTATACTCTAG ATAC-3′ 270 bp (wild type)
C 5′-TTATTGTAAGTACACTGTTGCTGTC-3′ 500 bp (1loxP)
Conditional constitutively active transgenic line
Before recombination
Fig. 2d [12] caAlk TF41 5′-GTGCTGGTTATTGTGCTGTCTC-3′ TF41:TF61:LbnFR1: LbnRev3 = 1:1:1:1 580 bp (caAlk transgene) 65 °C, 40 cycles
TF61 5′-GACGACAGTATCGGCCTCAGGAA-3′
LbnFR1 5′-GAGGACGCAGTCCAGTACCT-3′ 334 bp (Internal control)
LbnRev3 5′-TAGCCTCTGCCTCACGCCCT GC-3′
After recombination
Fig. 2d [11] caAlk2 TF41 (common) 5′-GTGCTGGTTATTGTG CTGTCTC-3′ TF41:TF9 = 1:1 750 bp (caAlk2 transgene) 65 °C, 40 cycles
TF9 (Alk2) 5′-CGAACACTACAGAGAGAAT AATG-3′
[12] caAlk3 TF41 (common) 5′-GTGCTGGTTATTGTGC TGTCTC-3′ TF41:TF17 = 1:1 300 bp (caAlk3 transgene)
TF17 (Alk3) 5′-CGGCGTAGCTGGGCTTTT GGA-3′
caAlk6 TF41 (common) 5′-GTGCTGGTTATTGTGC TGTCTC-3′ TF41:TF25 = 1:1 300 bp (caAlk6 transgene)
TF25 (Alk6) 5′-GACATCCAGAGGTGACAA CAG-3′