Table 1.
HPAI H5N5 viruses. Highly pathogenic avian influenza (HPAI) H5N5 viruses isolated during the HPAI H5 2016–2017 epidemic, ordered by genotype. Detailed information on the virus sequences is provided in Table S2.
| H5N5 Genotype | H5N5 Isolate Number | Host | Collection Date | Collection Location |
|---|---|---|---|---|
| H5N5-GT1 | 1 | Tufted duck | 2016-11-14 | Netherlands |
| H5N5-GT2 | 2 | Environment | 2016-10-01 | Russia |
| 3 | Swan | 2016-12-13 | Germany | |
| 4 | Mute swan | 2016-12-13 | Netherlands | |
| 5 a | Barnacle goose | 2016-12-22 | Germany | |
| 6 | Greylag goose | 2016-12-27 | Germany | |
| 7 | Mute swan | 2016-12-27 | Croatia | |
| 8 | Eurasian wigeon | 2016-12-29 | Italy | |
| 9 | Gadwall | 2017-01-10 | Italy | |
| 10 | Mute swan | 2017-01-20 | Croatia | |
| 11 | Grey heron | 2017-01-22 | Germany | |
| 12 a | Mute swan | 2017-01-31 | Poland | |
| 13 | Common buzzard | 2017-02-06 | Germany | |
| 14 | Mute swan | 2017-02-14 | Hungary | |
| 15 | Chicken | 2017-03-07 | Croatia | |
| H5N5-GT3 | 16 | Turkey | 2017-01-22 | Germany |
| 17 | Cormorant | 2017-01-30 | Germany | |
| 18 | Egret | 2017-02-14 | Germany | |
| 19 | Goose | 2017-05-22 | Netherlands | |
| Unknown | 20 a | Mute swan | 2017-02-09 | Czech Republic |
| 21 a | Spot-billed pelican | 2017-02-14 | Czech Republic |
a Viruses with incomplete genome sequence were excluded for phylogenetic network analysis.