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Possible structures of each low MFE miRNA-vRNA interaction predicted by RNAhybrid. The structures of seven low MFE miRNAs of Ae. aegypti potentially interact with CHIKV, DENV, and ZIKV. Among them, the possible binding sites for aae-miR-316-5p and aae-34-3p, and aae-miR-282-5p could be commonly found on both DENV and ZIKV. Sequence in red: the potential targets in RNA genome of each virus; sequence in blue: cellular miRNAs of Ae. aegypti.
