TABLE 3.

Significant variants from PCA

Gene	Chr	Position	Effect	PCA1 P value	PCA2 P value
CNAG_07950	1	975212	Upstream	0.047	0.141
CNAG_01241	5	836697	Upstream	0.04	0.505
	5	836899	Upstream	0.025	0.29
CNAG_02176	6	988733	Stop gained	0.047	0.749
	6	989490	NS	0.834	0.03
	6	989960	NS	0.967	0.039
CNAG_07703	7	1341024	NS	0.031	0.289
CNAG_07727	8	818838	Upstream	0.036	0.726
CNAG_08006	11	804710	5′UTR	0.048	0.312
CNAG_05987	12	19741	Upstream	0.355	0.031
CNAG_06169	12	503321	3′UTR	0.048	0.795
CNAG_05450	14	342562	NS	0.024	0.142
CNAG_05661	14	908850	Upstream	0.042	0.928
CNAG_05663	14	910328	Downstream	0.042	0.12
CNAG_05662	14	911099	Downstream	0.045	0.143
	14	911129	Downstream	0.048	0.046