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. Author manuscript; available in PMC: 2020 Jan 1.
Published in final edited form as: Methods Mol Biol. 2019;1962:65–95. doi: 10.1007/978-1-4939-9173-0_5

Figure 3:

Figure 3:

BRAKER pipelines for integration of protein information from closely related species: A) Training GeneMark-ET supported by RNA-Seq spliced alignment information, prediction with AUGUSTUS with spliced alignment information from RNA-Seq data and with gene features determined by alignments from proteins of a very closely related species against the target genome. B) Training AUGUSTUS on the basis of spliced alignment information from proteins of a very closely related species against the target genome. C) Training GeneMark-ET on the basis of RNA-Seq spliced alignment information, training AUGUSTUS on a set of training gene structures compiled from RNA-Seq supported gene structures predicted by GeneMark-ET and spliced alignment of proteins of a very closely related species.