Haplotype (n)	Continent (n)	GenBank accession numbers	References
1 (174)	South America (168) Asia (4) Europe (2)	AB620128, EU768935, FN907996, FN907997, GQ892847, GQ995232, KM274936, KM274939, KM274940, KM274958–KM274960, KM274964, KM274966–KM274969, KM274972, KM274975, KM274980, KM274981, KM274988, KM274989, KM274994, KM275046, KM275051, KM275052, KM275070, KM275073, KM275075, KM275078, KM275086, KM275088, KM275098, KM275099, KM275104, KM275106, KM275107, KM275108, KM275110, KM275111, KM275127, KM275134, KM275138, KM275140, KM275147, KM275148, KM275154, KM275156, KT828802–KT828827, KT828851–KT828889, KT828922–KT828929, KT828941–KT828943, KT828952, KT828953, KT828965, KT828966, KT828969, KT828971, KT828974, KT828975, KT828979, KT828985, KT828990, MG893742, MG893743, MG893746, MG893748, MG893750, MG893751, MG893754–MG893763, MG893778, MG893791, MG893792, MG893797, MG893798, MG893801, MG893803, MG893804, MG893812, MG893814, MG893815, MG893817–MG893819, MG893825, MG893831, MG893835, MG893836, MG893839, MG893840, MG893842, MG893752	In this work, Leite et al. (2014), Li et al. (2011), Unpublished
2 (151)	Central America (3) South America (130) Asia (11) Europe (4) Africa (3)	FN907995, FN908000, FN908003, FN908005, FN908011, FN908013–FN908015, FN908018, GQ892843, GQ892848, GQ892855, GQ995233–GQ995236, JX532104, KJ460247, KM274938, KM274943, KM274945, KM274946, KM274949, KM274950, KM274953, KM274961, KM274965, KM274970, KM274973, KM274974, KM274984–KM274987, KM274990, KM274992, KM274993, KM274995, KM274996, KM275040, KM275076, KM275081, KM275083, KM275084, KM275090, KM275091, KM275100, KM275103, KM275105, KM275152, KM275158, KT828763–KT828921, KT828937–KT828940, KT828947–KT828949, KT828958, KT828959, KT828968, KT828973, KT828976, KT828982, KT828991, MG893744, MG893745, MG893747, MG893753, MG893767, MG893777, MG893780, MG893782, MG893786, MG893788, MG893790, MG893795, MG893796, MG893800, MG893802, MG893805, MG893807, MG893821, MG893823, MG893824, MG893826, MG893827, MG893829, MG893834, MG893838, MG893843, MG893785	In this work, Leite et al. (2014), Li et al. (2011), Unpublished
3 (60)	South America (58) Europe (2)	FN908001, GU686757, KM274947, KM274957, KM274983, KM275039, KM275043, KM275047–KM275050, KM275072, KM275080, KM275085, KM275087, KM275089, KM275092, KM275097, KM275109, KM275137, KM275149, KM275150, KM275155, KM275157, KT828828‐KT828850, KT828967, KT828981, KT828989, MG893749, MG893776, MG893794, MG893799, MG893806, MG893809, MG893813, MG893822, MG893833, MG893841	In this work, Leite et al. (2014), Unpublished
4 (31)	South America (30) Asia (1)	GQ995242, KM274944, KM275202, KM275204–KM275206, KT828890–KT828901, MG893764–MG893766, MG893768–MG893772, MG893779, MG893781, MG893787, MG893816, MG893830	In this work, Leite et al. (2014), Li et al. (2011)
5 (17)	South America (14) Asia (1) Europe (1) Africa (1)	FN908002, FN908017, GQ892854, KM274963, KM274979, KM275074, KM275129, KM275130, KM275132, KT828944–KT828946, KT828964, KT828987, MG893793, MG893810, MG893811	In this work, Leite et al. (2014), Li et al. (2011), Unpublished
6 (15)	South America (15)	KM274971, KM275044, KM275071, KM275079, KT828930–KT828936, KT828972, MG893789, MG893832, MG893837	In this work, Leite et al. (2014)
7 (8)	South America (2) Asia (5) Europe (1)	FN907999, GQ892842, GQ995237, GQ995238, HM854928, HM854932, KM275112, KT828984	In this work, Leite et al. (2014), Li et al. (2011), Unpublished
8 (5)	Asia (5)	GQ892840, GQ892844, GQ892845, GQ892851, GQ892852	Li et al. (2011)
9 (5)	Central America (2) South America (3)	KT828956, KT828957, MG893783, MG893784, MG893820	In this work
10 (5)	South America (5)	KT828954, KT828955, MG893773–MG893775	In this work
11 (3)	South America (3)	KT828950, KT828951, MG893828	In this work
12 (3)	South America (2) Asia (1)	FN908016, KT828962, KT828963	In this work, Unpublished
13 (2)	South America (2)	KT828960, KT828961	In this work
14 (2)	South America (2)	KM274982, KM275153	Leite et al. (2014)
15 (2)	South America (2)	KM275128, KM275139	Leite et al. (2014)
16 (2)	Asia (1) Europe (1)	FN907998, HM854930	Unpublished
17 (1)	South America (1)	KM274937	Leite et al. (2014)
18 (1)	South America (1)	KM274941	Leite et al. (2014)
19 (1)	South America (1)	KM274948	Leite et al. (2014)
20 (1)	South America (1)	KM274951	Leite et al. (2014)
21 (1)	South America (1)	KM274952	Leite et al. (2014)
22 (1)	South America (1)	KM274962	Leite et al. (2014)
23 (1)	South America (1)	KM274991	Leite et al. (2014)
24 (1)	South America (1)	KM275038	Leite et al. (2014)
25 (1)	South America (1)	KM275041	Leite et al. (2014)
26 (1)	South America (1)	KM275042	Leite et al. (2014)
27 (1)	South America (1)	KM275045	Leite et al. (2014)
28 (1)	South America (1)	KM275077	Leite et al. (2014)
29 (1)	South America (1)	KM275082	Leite et al. (2014)
30 (1)	South America (1)	KM275101	Leite et al. (2014)
31 (1)	South America (1)	KM275102	Leite et al. (2014)
32 (1)	South America (1)	KM275131	Leite et al. (2014)
33 (1)	South America (1)	KM275133	Leite et al. (2014)
34 (1)	South America (1)	KM275135	Leite et al. (2014)
35 (1)	South America (1)	KM275136	Leite et al. (2014)
36 (1)	South America (1)	KM275151	Leite et al. (2014)
37 (1)	South America (1)	KM275203	Leite et al. (2014)
38 (1)	South America (1)	KT828970	In this work
39 (1)	South America (1)	KT828977	In this work
40 (1)	South America (1)	KT828978	In this work
41 (1)	South America (1)	KT828980	In this work
42 (1)	South America (1)	KT828983	In this work
43 (1)	South America (1)	KT828986	In this work
44 (1)	South America (1)	MG893808	In this work
45 (1)	South America (1)	KT828988	In this work
46 (1)	Asia (1)	GQ892846	Li et al. (2011)
47 (1)	Asia (1)	GQ892849	Li et al. (2011)
48 (1)	Asia (1)	GQ892850	Li et al. (2011)
49 (1)	Asia (1)	GQ892853	Li et al. (2011)
50 (1)	Asia (1)	GQ995239	Li et al. (2011)
51 (1)	Asia (1)	GQ995240	Li et al. (2011)
52 (1)	Asia (1)	GQ995241	Li et al. (2011)
53 (1)	Asia (1)	GQ995243	Li et al. (2011)
54 (1)	Asia (1)	GQ995244	Li et al. (2011)
55 (1)	Asia (1)	HM854929	Unpublished
56 (1)	Asia (1)	HM854931	Unpublished
57 (1)	Africa (1)	FN908006	Unpublished