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. 2019 Jul 11;10:1402. doi: 10.3389/fmicb.2019.01402

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Copyright © 2019 Yang, Xue, Tian, Hutchins, Yang and He.

This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.

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Identification of GGDEF, EAL and HD-GYP domain architecture and conserved motif in Xanthomonas oryzae pv. oryzae. Simple Modular Architecture Research Tool (SMART) (http://smart.embl-heidelberg.de/) was used to analyze the domains. The GGDEF domains implicated in c-di-GMP synthesis were shown in red, while the degenerate GGDEF domains in rectangle were predicted by SMART only with the Pfam database and displayed in orange. The EAL and HD-GYP domains implicated in c-di-GMP hydrolysis are illustrated in yellow and pink, respectively. ^***means amino acid deficiency when compared with homologous proteins.