Table 3.
Re‐annotated candidate genes located in a quantitative trait locus (QTL) for pycnidia density and percentage leaf area covered by lesions (PLACL) on chromosome 7 in Zymoseptoria tritici.
| Gene name | Description | Protein length | Signal peptide | Cysteine (%) (3D7) | Transmembrane (TM) domain |
|---|---|---|---|---|---|
| Zt_QTL7_1 a | ‐ | 504 | N | 2.4 | N |
| Zt_QTL7_2 a | ‐ | 228 | Y | 10.7 | N |
| Zt_QTL7_3 a | ‐ | 357 | N | 7.1 | N |
| Zt_QTL7_4 b | Hypothetical protein | 471 | N | 2.6 | Y |
| Zt_QTL7_5 a | ‐ | 198 | Y | 9.2 | N |
| Zt_QTL7_6 b | AMP‐binding enzyme family | 921 | N | 2.0 | Y |
| Zt_QTL7_7 b | Serine carboxypeptidase | 966 | N | 2.2 | N |
| Zt_QTL7_8 b | Hypothetical protein | 879 | N | 3.8 | N |
| Mycgr3T100839 c | Fe‐containing alcohol dehydrogenase | 1251 | N | 1.9 | N |
| Mycgr3T100840 c | Vacuolar membrane pq loop repeat | 972 | N | 1.5 | Y |
| Mycgr3T105313 c | Trichothecene efflux pump | 1788 | N | 1.3 | Y |
| Mycgr3T44611 c | Radical S‐adenosyl methionine domain‐containing 2 | 1074 | N | 3.1 | Y |
| Mycgr3T44946 c | Hypothetical protein | 666 | N | 0.5 | N |
| Mycgr3T45542 c | Lipoate ligase B | 720 | N | 2.5 | N |
| Mycgr3T74280 c | Prolyl 4‐hydroxylase | 1503 | N | 1.6 | N |
| Mycgr3T94634 c | Hypothetical protein | 525 | N | 2.3 | N |
| Mycgr3T94648 c | Hypothetical protein | 1143 | N | 0.3 | N |
| Mycgr3T94659 c | Hypothetical protein | 972 | N | 1.5 | N |
| Zt09_model_7_00553 d | Ferric‐chelate reductase (Fre2) | 2085 | N | 1.9 | Y |
| Zt09_model_7_00555 d | Hypothetical protein | 255 | N | 2.4 | N |
| Zt09_model_7_00556 d | Hypothetical protein | 1038 | N | 1.7 | N |
| Zt09_model_7_00557 d | Hypothetical protein | 378 | N | 0.0 | N |
| Zt09_model_7_00558 d | Major allergen alt a1, partial | 540 | Y | 2.8 | N |
| Zt09_model_7_00559 d | Hypothetical protein | 789 | N | 1.5 | Y |
| Zt09_model_7_00561 d | Hypothetical protein | 1302 | N | 2.1 | N |
| Zt09_model_7_00562 d | Hypothetical protein | 3663 | Y | 3.4 | N |
| Zt09_model_7_00563 d | Hypothetical protein | 1851 | N | 0.2 | N |
| Zt09_model_7_00564 d | Hypothetical protein | 1761 | N | 0.9 | Y |
| Zt09_model_7_00567 d | Hypothetical protein | 651 | N | 0.5 | N |
| Zt09_model_7_00569 d | Acid phosphatase | 456 | N | 2.3 | Y |
| Zt09_model_7_00571 d | Adenylate kinase | 696 | N | 0.0 | N |
| Zt09_model_7_00573 d | ‐ | 420 | N | 3.6 | N |
| Zt09_model_7_00574 d | Glycoside hydrolase | 933 | N | 3.2 | N |
| Zt09_model_7_00575 d | Glycoside hydrolase family 36 | 2238 | Y | 0.4 | N |
| Zt09_model_7_00577 d | Ca2+‐modulated non‐selective cation channel polycystin | 1917 | Y | 1.1 | N |
| Zt09_model_7_00578 d | Urease accessory | 780 | N | 1.2 | N |
| Zt09_model_7_00579 d | CFEM domain‐containing | 1230 | Y | 4.6 | Y |
| Zt09_model_7_00581 d | Hypothetical protein | 294 | N | 3.1 | N |
AMP, adenosine monophosphate; ‐, Unknown function.
Superscripts denote the source of the gene annotation: anew genes not present in previous annotations; bannotations modified from existing annotations; cannotation from the JGI reference annotation; dannotation from Grandaubert et al. (2015). Descriptions from blast2go, signal peptide predictions from signalP and TM domains from TMHMM. Protein length in amino acids and percentage of cysteines in the parental isolate 3D7.