Table 7.
Prediction of protein-coding genes in asparagus bean genome.
| Gene set | Gene number | Ave. gene length | Ave. CDS length | Total Exon number | Ave. exon number | Ave. exon length | Total intron number | |
|---|---|---|---|---|---|---|---|---|
| Homology | Augustus | 45,883 | 2,243.10 | 1,005.11 | 207,693 | 4.53 | 222.05 | 56,802,940 |
| Arabidopsis | 26,867 | 3,133.37 | 1,080.92 | 124,326 | 4.63 | 233.59 | 55,143,207 | |
| Pigeonpea | 44,018 | 3,055.98 | 996.71 | 169,707 | 3.86 | 258.52 | 90,644,666 | |
| Chickpea | 29,722 | 3,267.60 | 1,101.41 | 135,727 | 4.57 | 241.19 | 64,383,299 | |
| Soybean | 35,380 | 2,919.91 | 1,032.92 | 152,214 | 4.3 | 240.09 | 66,761,546 | |
| Lotus | 37,713 | 2,436.51 | 912.21 | 142,619 | 3.78 | 241.22 | 57,486,204 | |
| Medicago | 37,164 | 2,785.79 | 951.18 | 148,495 | 4 | 238.05 | 68,181,528 | |
| Rice | 25,956 | 2,971.76 | 1,010.14 | 112,815 | 4.35 | 232.41 | 50,915,754 | |
| Common bean | 32,860 | 3,059.37 | 1,099.25 | 149,363 | 4.55 | 241.84 | 64,409,431 | |
| Mungbean | 29,468 | 3,695.35 | 1,123.44 | 143,184 | 4.86 | 231.21 | 75,789,153 | |
| Grape | 27,358 | 3,732.39 | 1,059.30 | 134,163 | 4.9 | 216.01 | 73,130,296 | |
| Adzuki bean | 37,596 | 3,191.78 | 991.8 | 160,449 | 4.27 | 232.4 | 82,710,459 | |
| Denovo | Genscan | 40,736 | 8,880.46 | 1,153.45 | 230,011 | 5.65 | 204.28 | 314,767,263 |
| GlimmerHMM | 46,755 | 1,867.51 | 847.52 | 164,690 | 3.52 | 240.61 | 47,689,651 | |
| Transcriptome | 114,947 | 8,244.23 | 752.27 | 243,192 | 2.12 | 355.57 | 861,179,063 | |
| EVidenceModeler | 42,609 | 3,156.05 | 1,043.18 | 190,304 | 4.47 | 233.57 | 90,027,213 | |