Table 2.
Summary of transcriptome contigs encoding pleiotropic drug resistance (PDR) transporters from S clerotinia homoeocarpa
| Contig # | Contig length (bp) | Top blastx hit in Botrytis cinerea † (e value, % query coverage, % identity, # of amino acid matches/total amino acids aligned) | Top blastx hit (e value, % query coverage, % identity, # of amino acid matches/total amino acids aligned) | Baggerly's test, weighted proportions fold difference‡ | |
|---|---|---|---|---|---|
| Untreated | Treated | ||||
| 2174 | 4063 | BcatrA, CCD52170.1 (0, 99, 83, 1124/1358) | Botrytis cinerea, CCD52170.1 (0, 99, 83, 1124/1358) | −2.3*** | −2.3NS |
| 4492 | 7129 | BcatrD, CAC41639.1 (0, 87, 84, 1242/1482) | Botrytis cinerea, CAC41639.1 (0, 87, 84, 1242/1482) | 8.7* | 7.3* |
| 4985 | 5241 | BMR1, BAA93677.1 (0, 85, 85, 1257/1485) | Sclerotinia borealis, ESZ99265.1 (0, 87, 86, 1262/1476) | −1.1NS | 1.3NS |
| 6230 | 2984 | BcatrB, CCD54655.1 (0, 99, 83, 847/1020) | Monilinia fructicola, AAL80009.1 (0, 99, 84, 860/1020) | −1.6NS | −1.4NS |
| 6887 | 5223 | BcatrD, CAC41639.1 (0, 83, 64, 937/1471) | Aspergillus kawachii, GAA89082.1 (0, 87, 77, 1143/1485) | 11.0*** | 22.5NS |
| 7104 | 2804 | Unnamed, BAC67160.1 (0, 89, 87, 728/837) | Sclerotinia borealis, ESZ91198.1 (0, 91, 85, 733/858) | 1.0NS | 2.0NS |
| 8448 | 2401 | Unnamed, EMR87975.1 (0, 89, 80, 580/723) | Sclerotinia borealis, ESZ91198.1 (0, 88, 82, 586/716) | 1.6NS | 3.4NS |
*, *** and NS refer to significance at P ≤ 0.05, P ≤ 0.001 and not significant, respectively.
†Top blast hits are denoted by either gene name in B. cinerea as in the case of functionally characterized genes, or GenBank accession number as in the case of uncharacterized genes.
‡Fold differences between HRS10 and HRI11 isolates were calculated with HRS10 as the calibrator; therefore, positive values mean greater than HRS10, and negative values mean lower than HRS10.