Table 1.
Amino acid coordinates of methyl‐accepting chemotaxis protein (MCP) domains and transmembrane regions (TMs) determine the topology of the Dd3937 chemoreceptor
ID | TM | MCP | Topology classc | |||||||
---|---|---|---|---|---|---|---|---|---|---|
ASAPa | UNIPROTb | i1 | j1 | i2 | j2 | i3 | j3 | i | j | |
ABF‐0014536 | E0SHS4 | 10 | 32 | 181 | 203 | 334 | 501 | Ia | ||
ABF‐0014618 | E0SM30 | 36 | 58 | 214 | 232 | 367 | 531 | Ia | ||
ABF‐0014722 | E0SF47 | 7 | 29 | 190 | 209 | 344 | 511 | Ia | ||
ABF‐0014824 | E0SDP4 | 10 | 32 | 183 | 205 | 340 | 507 | Ia | ||
ABF‐0015168 | E0SH41 | 5 | 24 | 177 | 199 | 335 | 501 | Ia | ||
ABF‐0015513 | E0SBF1 | 20 | 42 | 200 | 222 | 360 | 523 | Ia | ||
ABF‐0015600 | E0SE76 | 12 | 34 | 278 | 295 | 431 | 598 | Ia | ||
ABF‐0015603 | E0SE77 | 38 | 60 | 300 | 317 | 451 | 618 | Ia | ||
ABF‐0016115 | E0SN86 | 13 | 35 | 269 | 285 | 421 | 588 | Ia | ||
ABF‐0016585 | E0SIA2 | 10 | 32 | 189 | 211 | 343 | 510 | Ia | ||
ABF‐0016979 | E0SEW8 | 10 | 32 | 183 | 205 | 343 | 510 | Ia | ||
ABF‐0017097 | E0SCJ7 | 17 | 39 | 272 | 290 | 427 | 593 | Ia | ||
ABF‐0017662 | E0SFJ0 | 5 | 27 | 187 | 204 | 342 | 508 | Ia | ||
ABF‐0017665 | E0SFJ2 | 36 | 58 | 213 | 235 | 372 | 538 | Ia | ||
ABF‐0017668 | E0SFJ3 | 10 | 32 | 184 | 206 | 344 | 511 | Ia | ||
ABF‐0017672 | E0SFJ4 | 10 | 32 | 184 | 206 | 347 | 514 | Ia | ||
ABF‐0017674 | E0SFJ5 | 20 | 39 | 201 | 223 | 359 | 526 | Ia | ||
ABF‐0017863 | E0SI11 | 10 | 32 | 189 | 211 | 346 | 510 | Ia | ||
ABF‐0017896 | E0SHY9 | 11 | 33 | 178 | 200 | 337 | 503 | Ia | ||
ABF‐0018502 | E0SEF0 | 10 | 32 | 187 | 209 | 346 | 512 | Ia | ||
ABF‐0018541 | E0SFF6 | 10 | 32 | 182 | 204 | 336 | 505 | Ia | ||
ABF‐0018585 | E0SJX6 | 20 | 42 | 199 | 221 | 357 | 524 | Ia | ||
ABF‐0018754 | E0SIM4 | 10 | 32 | 179 | 201 | 336 | 503 | Ia | ||
ABF‐0018765 | E0SIN3 | 20 | 42 | 204 | 226 | 356 | 518 | Ia | ||
ABF‐0018892 | E0SJ51 | 20 | 42 | 194 | 216 | 355 | 522 | Ia | ||
ABF‐0019050 | E0SAP6 | 15 | 37 | 270 | 292 | 427 | 591 | Ia | ||
ABF‐0019306 | E0SF78 | 13 | 35 | 282 | 299 | 435 | 601 | Ia | ||
ABF‐0019718 | E0SHT9 | 7 | 29 | 180 | 202 | 336 | 502 | Ia | ||
ABF‐0019790 | E0SF98 | 10 | 32 | 187 | 209 | 344 | 510 | Ia | ||
ABF‐0019851 | E0SM37 | 7 | 29 | 179 | 194 | 333 | 499 | Ia | ||
ABF‐0019852 | E0SM36 | 20 | 42 | 195 | 214 | 348 | 515 | Ia | ||
ABF‐0019855 | E0SM35 | 13 | 35 | 185 | 204 | 340 | 507 | Ia | ||
ABF‐0019858 | E0SM34 | 31 | 53 | 202 | 222 | 357 | 522 | Ia | ||
ABF‐0020167 | E0SDB0 | 10 | 29 | 178 | 200 | 340 | 507 | Ia | ||
ABF‐0020252 | E0SF13 | 25 | 47 | 288 | 314 | 439 | 604 | Ia | ||
ABF‐0020431 | E0SDX8 | 5 | 27 | 168 | 190 | 327 | 489 | Ia | ||
ABF‐0046680 | E0SMA1 | 58 | 77 | 348 | 370 | 504 | 670 | Ia | ||
ABF‐0017537 | E0SD21 | 10 | 32 | 142 | 147 | 421 | 586 | Ia | ||
ABF‐0017419 | E0SJN1 | 138 | 160 | 295 | 462 | Ib | ||||
ABF‐0014726 | E0SF49 | 159 | 178 | 188 | 200 | 335 | 497 | II | ||
ABF‐0019309 | E0SF75 | 164 | 181 | 186 | 205 | 341 | 506 | II | ||
ABF‐0014843 | E0SDM9 | 147 | 151 | 165 | 180 | 185 | 196 | 337 | 499 | III |
ABF‐0016380 | E0SEN9 | 30 | 52 | 183 | 205 | 336 | 350 | 490 | 656 | III |
ABF‐0018511 | E0SEE2 | 13 | 30 | 196 | 203 | 315 | 330 | 468 | 633 | III |
ABF‐0016436 | E0SMM7 | 297 | 417 | IVa | ||||||
ABF‐0017090 | E0SCK2 | 474 | 615 | IVa | ||||||
ABF‐0017824 | E0SI40 | 17 | 131 | IVa |
Nomenclature from the ASAP database (https://asap.ahabs.wisc.edu/asap/logon/php).
Nomenclature from the UNIPROT database (http://www.uniprot.org/).
Topology class according to Lacal et al. (2010a).