Table 1.
P hytophthora cactorum PcF/small cysteine‐rich (SCR) effectors analysed in this study
| Gene* | GenBank accession no. | Gene length (bp) | SignalP HMM # | SignalP NN # | SignalP length (amino acids) # | Number of cysteine residues† |
|---|---|---|---|---|---|---|
| PcF | KT215392 | 222 | 0.999 | 0.940 | 21 | 6 |
| scr96 | KT215393 | 291 | 0.999 | 0.851 | 23 | 8 |
| scr99 | KT215394 | 300 | 1.00 | 0.964 | 19 | 6 |
| scr121 | KT215395 | 366 | 0.994 | 0.916 | 22 | 6 |
*The gene sequences were amplified from the isolate 10 300 (Chen et al., 2014).†Only cysteine residues in the mature peptide sequences were counted.
#Hidden Markov model (HMM) probability, Neural Network (NN) mean S score, and signal peptide length were predicted using SignalP v3.0.