Table 1.
Overview of the transcriptomic sequencing data collected for the time course and replicated dataset experiments performed on the Swiss Zymoseptoria tritici isolate 3D7.
| Infection stage (dpi) | Library ID | Replicate | Library strategy | Total reads (millions) | Mapped reads (millions) | Alignment rate (%) |
|---|---|---|---|---|---|---|
| Time course experiment (all raw data available under the NCBI SRA experiment SRX1116288) | ||||||
| 3 | D3_2 | 1 | Single‐end | 95.30 | 0.73 | 0.80 |
| 7 | D7_5 | 1 | Single‐end | 109.46 | 1.45 | 1.30 |
| 11 | D11_1 | 1 | Single‐end | 136.81 | 7.45 | 5.40 |
| 14 | D14_7 | 1 | Single‐end | 119.07 | 68.69 | 57.70 |
| 21 | D21_9 | 1 | Single‐end | 116.65 | 86.00 | 73.70 |
| 56 | W8_5 | 1 | Single‐end | 73.03 | 54.20 | 74.20 |
| Total | 650.32 | 218.53 | ||||
| Replicated dataset experiment (all raw data available under the NCBI SRA experiment SRX1116289) | ||||||
| 7 | D7_2 | 1 | Paired‐end | 169.29 | 2.05 | 1.20 |
| 7 | D7_5 | 2 | Paired‐end | 160.27 | 2.22 | 1.40 |
| 7 | D7_8 | 3 | Paired‐end | 335.33 | 3.69 | 1.10 |
| 13 | D13_2 | 1 | Paired‐end | 40.63 | 5.09 | 12.50 |
| 13 | D13_4 | 2 | Paired‐end | 41.80 | 8.45 | 20.20 |
| 13 | D13_5 | 3 | Paired‐end | 46.49 | 11.25 | 24.20 |
| 56 | W8_1 | 1 | Paired‐end | 39.20 | 29.49 | 75.20 |
| 56 | W8_4 | 2 | Paired‐end | 34.22 | 25.79 | 75.40 |
| 56 | W8_7 | 3 | Paired‐end | 27.77 | 20.79 | 74.90 |
| Total | 894.99 | 108.82 | ||||