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. 2016 Feb 8;17(6):875–889. doi: 10.1111/mpp.12337

Figure 2.

Figure 2

Venn diagram illustrating the RNA‐Sequencing (RNA‐Seq) experimental approach to identify TAL14Xam668 targeted genes. Cassava leaf tissue was infiltrated with strains at an optical density at 600 nm (OD600) of 0.5 and collected after 48 h. RNA‐Seq analysis identified genes up‐regulated [log2(fold change) >1 and fragments per kilobase transcript per million mapped reads (FPKM) difference >5] by both Xanthomonas axonopodis pv. manihotis (Xam) strain Xam668 compared with mock inoculation (10 mm MgCl2) and by X. euvesicatoria 85‐10 delivering TAL14Xam668 [Xe(TAL14)] versus wild‐type Xe as potential TAL14Xam668 targets. The total number of genes identified in each group is displayed.