Table 2.

Total number of contigs matching to various species.

Number of contigs*	Phytophthora infestans †	Non‐Pi‡	Non‐Pi maps to§
			Phas	Gm	Mt	Ps	Pr
Full dataset
301 868	117 702	184 116	127 566	117 420	63 478	2 209	1 920
% of 184 116			69.3	63.8	34.5	1.2	1.0
P18 dataset
142 089	110 965	31 124	3 201	2294	1 580	1 961	1 714
% of 31 124			10.3	7.4	5.1	6.3	5.5
T3 dataset
147 564	17 721	129 843	108 522	99 897	55 239	534	442
% of 129 843			83.6	76.9	42.5	0.4	0.3
T6 dataset
236 139	99 941	136 198	96 955	86 628	48 376	1 927	1 681
% of 136 198			71.2	63.6	35.5	1.4	1.2

^* Number of contigs assembled for the total experiment, and for each sample.

^† Number of contigs that mapped to the P. infestans genome (with an e‐value of ≤e⁻¹⁰).

^‡ Number of contigs that did not map to the P. infestans genome (‘non‐Pi’).

^§ Non‐Pi contigs that mapped to one of the following genomes: Phas, Phaseolus species (Phaseolus coccineus, Phaseolus vulgaris, Phaseolus acutifolius and Phaseolus angustissimus); Gm, Glycine max; Mt, Medicago truncatula; Ps, Phytophthora sojae; Pr, Phytophthora ramorum.