Table 1.
Numbers of differentially expressed genes between in planta developmental stages, between in planta and corresponding in vitro samples, and between in vitro developmental stages. The various comparisons are listed as a test against a control and the differentially expressed genes are reported as relative to the test. The numbers in parentheses indicate the numbers of differentially expressed genes that have informative gene ontologies.
| Comparisons (test vs. control) | Significantly higher expression in test | Significantly lower expression in test |
|---|---|---|
| 3 dpi IP vs. late IP | 1693(372) | 2488(842) |
| 5 dpi IP vs. late IP | 189(29) | 232(64) |
| 3 dpi IP vs. 5 dpi IP | 849(118) | 780(298) |
| 4 dpi IV vs. 16 dpi IV | 918(419) | 828(233) |
| 3 dpi IP vs. 4 dpi IV | 2105(646) | 2981(906) |
| 5 dpi IP vs. 4 dpi IV | 1114(518) | 1396(379) |
| Late IP vs. 16 dpi IV | 1353(653) | 1238(276) |
IP, in planta; IV, in vitro.