Table 3.
Metabolic pathways that have at least two genes that are differentially expressed when in planta conditions are compared.
| Pathway | 3 dpi IP > late IP | 3 dpi IP < late IP |
|---|---|---|
| Choline biosynthesis III (4 genes) | 2 | |
| Fatty acid biosynthesis—initial steps I (10 genes) | 2 | |
| Fatty acid elongation—saturated (25 genes) | 2 | 6 |
| Fatty acid β‐oxidation II (core pathway) (16 genes) | 4 | |
| Glycogen biosynthesis II (from UDP‐d‐glucose) (4 genes) | 2 | |
| Histidine biosynthesis I (7 genes) | 3 | |
| Homogalacturonan degradation (5 genes) | 2 | |
| Ornithine biosynthesis (6 genes) | 2 | |
| Oxidative ethanol degradation I (22 genes) | 1 | 5 |
| Phospholipases (8 genes) | 4 | |
| Proline degradation I (3 genes) | 2 | |
| Purine nucleotides de novo biosynthesis II (11 genes) | 5 | |
| Pyruvate fermentation to ethanol II (17 genes) | 1 | 3 |
| Removal of superoxide radicals (9 genes) | 1 | 2 |
| Salvage pathways of adenine, hypoxanthine and their nucleosides (5 genes) | 2 | 1 |
| β‐Alanine biosynthesis V (8 genes) | 3 | |
| Sucrose degradation to ethanol and lactate (anaerobic) (25 genes) | 1 | 5 |
| Sulphate reduction I (assimilatory) (5 genes) | 3 | |
| Sulphite oxidation IV (3 genes) | 2 | |
| TCA cycle variation III (eukaryotic) (12 genes) | 2 | |
| Tetrapyrrole biosynthesis II (5 genes) | 2 | |
| Triacylglycerol biosynthesis (8 genes) | 2 | |
| Triacylglycerol degradation (25 genes) | 6 | 7 |
| tRNA charging pathway (25 genes) | 2 | |
| Tryptophan degradation to 2‐amino‐3‐carboxymuconate semialdehyde (4 genes) | 1 | 2 |
| Tryptophan degradation VI (via tryptamine) (8 genes) | 2 | |
| Tyrosine degradation I (7 genes) | 4 | |
| UDP‐N‐Acetyl‐d‐galactosamine biosynthesis II (4 genes) | 2 | |
| Valine degradation II (24 genes) | 1 | 3 |
| Xylitol degradation (4 genes) | 2 |
TCA, tricarboxylic acid; UDP, uridine diphosphate.