Table 1.
Top 12 biological process terms in identical up‐ or down‐regulated differentially expressed genes (DEGs) in all three Cucumber mosaic virus (CMV) samples
| Biological process gene ontology term | Number of annotated genes |
|---|---|
| Up‐regulated identical DEGs | |
| Biological_process | 86 |
| Response to cadmium ion | 17 |
| Response to cold | 17 |
| Response to heat | 17 |
| Response to salt stress | 17 |
| Protein phosphorylation | 15 |
| Response to abscisic acid stimulus | 15 |
| Regulation of transcription, DNA‐dependent | 14 |
| Oxidation–reduction process | 13 |
| Metabolic process | 11 |
| Proteolysis | 11 |
| Ubiquitin‐dependent protein catabolic process | 11 |
| Down‐regulated identical DEGs | |
| Biological_process | 27 |
| Protein phosphorylation | 10 |
| Response to ethylene stimulus | 9 |
| Photosynthesis, light reaction | 5 |
| Peptidyl‐cysteine S‐nitrosylation | 4 |
| Defence response to bacterium | 3 |
| Embryo development ending in seed dormancy | 3 |
| Lipid transport | 3 |
| Photoinhibition | 3 |
| Photosynthetic electron transport in photosystem II | 3 |
| Regulation of transcription, DNA‐dependent | 3 |
| Seed development | 3 |