Table 2.
Gene responses to photosynthesis by C ucumber mosaic virus (CMV) infections
| Seq_ID | Gene_ID | Description* | Fold change | ||
|---|---|---|---|---|---|
| pepo | 129A | 129Q | |||
| Chlorophyll synthesis enzymes | |||||
| 2063895 | AM746200 | gb|Nicotiana tabacum partial mRNA for glutamyl tRNA reductase (hemA gene) [AM746200] | −1.449 | −1.714 | −3.729 |
| 2087091 | Y13465 | gb|Nicotiana tabacum mRNA for protoporphyrin IX oxidase, ppxI gene [Y13465] | −1.348 | −1.489 | −2.230 |
| 2071594 | Y13466 | gb|Nicotiana tabacum mRNA for protoporphyrin IX oxidase, ppxII gene [Y13466] | −1.306 | −1.478 | −2.000 |
| 2056751 | AF014052 | gb|Nicotiana tabacum Mg protoporphyrin IX chelatase (Chl H) mRNA, complete cds [AF014052] | −1.812 | −2.312 | −4.406 |
| 2062458 | AF014051 | gb|Nicotiana tabacum Mg chelatase subunit (ChlH) mRNA, partial cds [AF014051] | −2.653 | −3.811 | −8.932 |
| 2053947 | AF014053 | gb|Nicotiana tabacum Mg protoporphyrin chelatase subunit (Chl I) mRNA, complete cds [AF014053] | −1.465 | −1.375 | −2.598 |
| 2086473 | AF213968 | gb|Nicotiana tabacum S‐adenosyl‐l‐methionine Mg‐protoporphyrin IX methyltranserase (Chl M) mRNA, complete cds; chloroplast gene for chloroplast product [AF213968] | −1.345 | −1.507 | −2.581 |
| 2088483 | AB074570 | gb|Nicotiana tabacum POR1 mRNA for NADPH:protochlorophyllide oxidoreductase, complete cds [AB074570] | −2.040 | −3.204 | −10.222 |
| 2045033 | AB074571 | gb|Nicotiana tabacum POR2 mRNA for NADPH:protochlorophyllide oxidoreductase, complete cds [AB074571] | −1.942 | −2.086 | −5.333 |
| 2071017 | TA14106_4097 | tc|Rep: NADPH:protochlorophyllide oxidoreductase—Nicotiana tabacum (Common tobacco), complete [TC123693] | −2.151 | −3.021 | −10.959 |
| 2056228 | EB435437 | gb|Nicotiana tabacum cultivar SNN chlorophyll synthase (CHLG) mRNA, CHLG‐1 allele, complete cds [FJ905101] | −1.858 | −1.607 | −2.516 |
| Antenna proteins | |||||
| 2066778 | TA12484_4097 | tc|Rep: Photosystem I light‐harvesting chlorophyll a/b‐binding protein—Nicotiana tabacum (Common tobacco), complete [TC123481] | −1.279 | −1.740 | −5.903 |
| 2056014 | DQ676843 | gb|Nicotiana tabacum chloroplast pigment‐binding protein CP29 (Lhcb4) mRNA, complete cds; nuclear gene for chloroplast product [DQ676843] | 1.068 | −1.079 | −2.272 |
| 2046950 | TA11963_4097 | tc|Rep: Chloroplast pigment‐binding protein CP26—Nicotiana tabacum (Common tobacco), complete [TC125988] | −1.189 | −1.431 | −2.541 |
| 2045845 | TA12003_4097 | tc|Rep: Chloroplast pigment‐binding protein CP24—Nicotiana tabacum (Common tobacco), complete [TC123534] | −1.335 | −2.005 | −8.176 |
| 2061062 | AY219853 | gb|Nicotiana tabacum chlorophyll a [AY219853] | −1.465 | −2.349 | −7.952 |
| 2076491 | EB437069 | gb|Tobacco Cab40 mRNA for major chlorophyll a [X52744] | 1.096 | 1.015 | −2.454 |
| 2065407 | TA14592_4097 | tc|Rep: Light harvesting chlorophyll a/b‐binding protein precursor—Nicotiana sylvestris (Wood tobacco), complete [TC123590] | −2.256 | −3.390 | −38.019 |
| PSI‐related proteins | |||||
| 2066487 | TA11940_4097 | tc|Rep: Photosystem I reaction centre subunit X psaK—Nicotiana tabacum (Common tobacco), complete [TC145810] | −1.987 | −2.698 | −5.533 |
| 2055540 | TA12233_4097 | tc|Rep: Photosystem I psaH protein precursor—Nicotiana sylvestris (Wood tobacco), complete [TC160540] | −1.071 | −1.311 | −2.356 |
| 2049821 | X61665 | gb|Nicotiana tabacum psaH gene for photosystem I psaH protein [X61665] | −1.524 | −1.895 | −3.951 |
| 2059656 | TA15345_4097 | tc|Rep: PSI‐D1 precursor—Nicotiana sylvestris (Wood tobacco), partial (98%) [TC132237] | −1.100 | −1.345 | −6.228 |
| 2061307 | TA13529_4097 | tc|Rep: Photosystem I reaction centre subunit IV A, chloroplast precursor (PSI‐E A) [Contains: Photosystem I reaction centre subunit IV A isoform 2]—Nicotiana sylvestris (Wood tobacco), complete [TC139467] | −1.458 | −1.701 | −4.772 |
| 2062539 | EB681816 | tc|Rep: Photosystem I subunit XI—Nicotiana attenuata, partial (54%) [TC163205] | −2.050 | −3.723 | −15.889 |
| PSII‐related proteins | |||||
| 2074876 | EB435020 | tc|Rep: Chloroplast photosystem II PsbR—Prosopsis juliflora (Mesquite) (Algorrobo), partial (97%) [TC136185] | 1.494 | 2.859 | 1.213 |
| 2073564 | TA14635_4097 | tc|Rep: Photosystem II P680 chlorophyll A apoprotein—Solanum lycopersicum (Tomato) (Lycopersicon esculentum), complete [TC126534] | 1.036 | 1.079 | 1.105 |
| 2065604 | X55354 | gb|Nicotiana tabacum mRNA for a photosystem II 23‐kDa polypeptide [X55354] | −1.851 | −2.152 | −6.004 |
| 2088164 | TA21687_4097 | tc|Rep: Photosystem II 44‐kDa reaction centre protein—Nicotiana tabacum (Common tobacco), partial (59%) [TC143855] | −1.017 | −1.029 | −1.162 |
| 2049904 | AY220076 | gb|Nicotiana tabacum oxygen‐evolving complex 33‐kDa photosystem II protein (PsbO) mRNA, complete cds; nuclear gene for chloroplast product [AY220076] | −1.474 | −2.183 | −4.278 |
| 2055573 | TA11936_4097 | tc|Rep: Chloroplast oxygen‐evolving protein 16‐kDa subunit—Nicotiana tabacum (Common tobacco), complete [TC126580] | 1.237 | −1.677 | −3.939 |
| Electric transport chain proteins | |||||
| 2050723 | EH621693 | tc|Rep: Plastid quinol oxidase—Solanum lycopersicum (Tomato) (Lycopersicon esculentum), partial (86%) [TC141050] | −1.075 | 1.110 | 1.217 |
| 2058215 | TC74155 | tc|Rep: Cytochrome b6—Nicotiana sylvestris (Wood tobacco), partial (48%) [TC166043] | 1.006 | 1.006 | −1.315 |
| Rubisco proteins | |||||
| 2084950 | TA11967_4097 | tc|Rep: Ribulose bisphosphate carboxylase large chain precursor—Nicotiana sylvestris (Wood tobacco), complete [TC122913] | 1.302 | 1.263 | −1.029 |
| 2053317 | EB435775 | tc|Rep: Ribulose bisphosphate carboxylase small chain—Nicotiana tabacum (Common tobacco), complete [TC165446] | −1.554 | −1.330 | −3.268 |
| 2063791 | TA11709_4097 | tc|Rep: Ribulose bisphosphate carboxylase small chain, chloroplast precursor—Nicotiana sylvestris (Wood tobacco), complete [TC126140] | 1.121 | 1.181 | 1.003 |
| 2053421 | U35620 | gb|Nicotiana tabacum ribulose‐1,5 bisphosphate carboxylase [U35620] | −1.417 | −1.334 | −2.303 |
| Chlorophyll catabolism | |||||
| 2049008 | EU294210 | gb|Nicotiana tabacum putative chlorophyllase mRNA, complete cds [EU294210] | −1.372 | −1.086 | −1.875 |
| 2064248 | EU294213 | gb|Nicotiana tabacum putative red chlorophyll catabolite reductase mRNA, complete cds [EU294213] | −1.088 | 1.040 | 1.391 |
| Chloroplast differentiation | |||||
| 2046133 | EF606850 | gb|Nicotiana tabacum plastid division regulator MinD mRNA, complete cds; nuclear gene for plastid product [EF606850] | −1.544 | −1.295 | −1.754 |
| 2053978 | AJ133453 | gb|Nicotiana tabacum mRNA for FtsZ‐like chloroplast protein [AJ133453] | −1.817 | −1.589 | −2.193 |
| 2052856 | AJ271748 | gb|Nicotiana tabacum partial mRNA for chloroplast FtsZ‐like protein (ftsZ gene), clone FtsZ1‐1 [AJ271748] | −1.509 | −1.588 | −2.372 |
*The gene descriptions are from Agilent's information for the tobacco microarray.