Table 2.
Differentially regulated genes as a result of oxalic acid (OA) infiltration independent of its pH. Comparisons between infiltrations of OA in leaves of OxO (the transgenic soybean expressing oxalate oxidase) and its parent AC (AC Colibri)
| Oligo array ID | Log2 ratio | Best match to Glyma models | Short annotation | ||
|---|---|---|---|---|---|
| OA/H2O pH 2.4 | |||||
| Overall | OxO | AC | |||
| GM18751P049N07 | 4.23 | 3.39 | 4.04 | Glyma18g43650.1 | Ferritin light chain |
| GM18681P049K09 | 4.00 | 2.98 | 4.20 | Glyma18g43650.1 | Ferritin |
| GM14987P040A11 | 3.49 | 2.72 | 3.62 | Glyma03g06420.2 | Ferritin 2 |
| GM05373P014P21 | 2.41 | 1.71 | 2.40 | Glyma11g35610.1 | Ferritin 2 |
| GM12232P032N16 | 2.32 | 1.74 | 2.28 | Glyma01g31300.1 | Ferritin 3 |
| GM18577P049G01 | 1.90 | 1.18 | 2.01 | Glyma14g06160.1 | Ferritin 4 |
| GM04737P013F09 | 1.79 | 1.42 | 1.91 | Glyma02g43040.2 | Ferritin 4 |
| GM14944P039O16 | 1.72 | 1.13 | 1.52 | Glyma18g02800.2 | Ferritin 3 |
| GM03715P010K19 | 1.40 | 1.60 | 1.65 | Glyma09g25470.4 | Putative acyl‐CoA synthetase |
| GM09947P026O11 | 1.35 | 1.38 | 0.87 | Glyma10g32820.1 | Protease inhibitor 2 |
| GM10142P027G14 | 1.15 | 0.75 | 1.13 | Glyma07g02180.2 | Long‐chain fatty acid CoA ligase |
| GM04776P013G24 | 1.06 | 0.69 | 1.24 | Glyma07g33780.2 | Caffeoyl‐CoA O‐methyltransferase |
| GM07411P020E19 | 1.01 | 0.96 | 1.29 | Glyma09g39390.1 | No hits |
| GM04726P013E22 | 0.97 | 0.82 | 1.39 | Glyma13g01080.2 | 4‐Coumarate:coenzyme A ligase |
| GM10325P027O05 | 0.90 | 0.89 | 1.06 | Glyma08g23560.2 | Hydroxycinnamoyl transferase |
| GM18849P050B09 | 0.89 | 0.69 | 0.98 | No match | Caffeic acid O‐methyltransferase |
| GM12430P033F22 | 0.87 | 1.09 | 0.11 | Glyma01g26840.2 | Unknown |
| GM38358P100O06 | 0.87 | 0.98 | 1.17 | No match | Phenylalanine ammonia‐lyase |
| GM14959P039P07 | 0.87 | 0.86 | 1.08 | Glyma10g06600.1 | Phenylalanine ammonia‐lyase |
| GM18945P050F09 | 0.86 | 0.68 | 0.83 | No match | Caffeic acid O‐methyltransferase |
| GM19041P050J09 | 0.86 | 0.71 | 0.95 | No match | Caffeic acid O‐methyltransferase |
| GM13565P036F05 | 0.85 | 0.83 | 1.19 | Glyma13g20800.1 | Phenylalanine ammonia‐lyase |
| GM35930P094J02 | 0.85 | 0.55 | 0.92 | Glyma13g06550.1 | Quercetin 3‐O‐glucoside‐6″‐O‐malonyltransferase |
| GM04128P011L24 | 0.84 | 0.69 | 0.97 | Glyma14g38580.1 | trans‐Cinnamate 4‐monooxygenase |
| GM01662P005F06 | 0.83 | 0.97 | 0.76 | Glyma10g44170.2 | Homogentisate phytylprenyltransferase |
| GM15500P041F20 | 0.83 | 1.08 | 1.27 | Glyma01g33150.1 | Putative cytochrome P450 |
| GM31871P083P23 | 0.81 | 0.65 | 1.50 | Glyma10g40750.1 | Unknown |
| GM04366P012F22 | 0.81 | 0.61 | 1.22 | Glyma11g15680.5 | Ascorbate peroxidase |
| GM06501P017O21 | 0.78 | 0.71 | 0.86 | Glyma13g20800.1 | Phenylalanine ammonia‐lyase |
| GM36437P095O05 | 0.78 | 0.10 | 1.26 | Glyma14g05350.1 | 1‐Aminocyclopropane‐1‐carboxylate oxidase |
| GM18406P048O22 | 0.77 | 0.48 | 1.24 | Glyma12g07780.3 | Ascorbate peroxidase 2 |
| GM19137P050N09 | 0.76 | 0.63 | 0.87 | No match | Caffeic acid O‐methyltransferase |
| GM14124P037M12 | 0.75 | 0.69 | 1.31 | Glyma01g32400.1 | Protein kinase |
| GM38070P100C06 | 0.75 | 0.82 | 1.14 | No match | Phenylalanine ammonia‐lyase |
| GM12369P033D09 | 0.75 | 0.85 | 1.47 | Glyma19g01470.1 | α‐Dioxygenase |
| GM38262P100K06 | 0.75 | 0.94 | 1.12 | No match | Phenylalanine ammonia‐lyase |
| GM19158P050O06 | 0.75 | 0.69 | 1.05 | No match | Phenylalanine ammonia‐lyase |
| GM07122P019I18 | 0.74 | 0.97 | 1.08 | Glyma10g06600.1 | Phenylalanine ammonia‐lyase |
| GM18660P049J12 | 0.73 | 0.84 | 1.01 | Glyma18g45260.1 | 2′‐Hydroxydihydrodaidzein reductase |
| GM38166P100G06 | 0.69 | 0.73 | 1.12 | No match | Phenylalanine ammonia‐lyase |
| GM18870P050C06 | 0.66 | 0.72 | 0.77 | No match | Phenylalanine ammonia‐lyase |
| GM19150P050N22 | 0.66 | 0.77 | 0.91 | No match | Cinnamoyl CoA dehydrogenase |
| GM19062P050K06 | 0.65 | 0.61 | 0.80 | No match | Phenylalanine ammonia‐lyase |
| GM18966P050G06 | 0.65 | 0.59 | 0.84 | No match | Phenylalanine ammonia‐lyase |
| GM04388P012G20 | 0.65 | 0.63 | 0.97 | Glyma10g40870.3 | Cinnamyl‐alcohol dehydrogenase |
| GM18958P050F22 | 0.63 | 0.76 | 0.81 | No match | Cinnamoyl CoA dehydrogenase |
| GM12707P034B11 | 0.60 | 0.57 | 0.87 | Glyma0169s00210.1 | Monodehydroascorbate reductase |
| GM03619P010G19 | 0.59 | 0.52 | 0.78 | Glyma01g41450.1 | Lipase class 3 |
| GM18862P050B22 | 0.59 | 0.62 | 0.84 | No match | Cinnamoyl CoA dehydrogenase |
| GM12288P032P24 | 0.57 | 0.71 | 0.93 | Glyma13g36110.1 | Putative cytochrome P450 |
| GM35875P094G19 | 0.57 | 0.59 | 0.99 | Glyma02g40550.1 | 2‐Hydroxyphytanoyl‐CoA lyase |
| GM31372P082L04 | 0.55 | 0.73 | 1.04 | Glyma12g01780.1 | Alcohol dehydrogenase |
| GM15220P040K04 | 0.48 | 0.36 | 0.58 | Glyma01g36890.1 | Dehydroquinate synthase |
| GM38242P100J10 | 0.47 | 0.40 | 0.84 | No match | Cinnamoyl CoA reductase |
| GM10980P029J12 | 0.44 | 0.72 | 0.87 | Glyma02g04120.2 | ATP citrate lyase b‐subunit |
| GM13944P037E24 | 0.44 | 0.52 | 0.85 | Glyma15g15020.1 | ATP citrate lyase a‐subunit |
| GM19054P050J22 | 0.43 | 0.55 | 0.72 | No match | Cinnamoyl CoA dehydrogenase |
| GM34640P091D08 | 0.39 | 0.41 | 1.04 | Glyma16g01710.1 | Zinc finger |
| GM19138P050N10 | 0.36 | 0.33 | 0.54 | No match | Cinnamoyl CoA reductase |
| GM05086P014D22 | 0.33 | 0.37 | 0.76 | Glyma02g11740.1 | No hits |
| GM04356P012F12 | 0.32 | 0.43 | 0.72 | Glyma06g19820.3 | Aldehyde dehydrogenase |
| GM03791P010N23 | 0.30 | 0.32 | 0.56 | Glyma18g50940.1 | frnE protein‐like |
| GM12611P033N11 | −0.16 | −0.46 | −0.73 | Glyma01g42360.1 | Unknown |
| GM07176P019K24 | −0.28 | −0.40 | −0.65 | Glyma05g02250.1 | Inositol 1,3,4‐trisphosphate 5/6‐kinase |
| GM07686P021A06 | −0.31 | −0.50 | −0.97 | Glyma04g01750.2 | Glyceraldehyde‐3‐phosphate dehydrogenase |
| GM11660P031F20 | −0.32 | −0.22 | −0.41 | Glyma07g13210.1 | No hits |
| GM12224P032N08 | −0.32 | −0.49 | −1.12 | Glyma03g42240.3 | Unknown |
| GM01627P005D19 | −0.35 | −0.27 | −0.81 | Glyma12g06920.2 | PPF‐1 protein |
| GM02011P006D19 | −0.38 | −0.62 | −1.00 | Glyma04g02100.1 | FtsH protease |
| GM07366P020C22 | −0.38 | −0.60 | −1.00 | Glyma20g12740.1 | Phosphate translocator |
| GM22715P060C11 | −0.42 | −0.44 | −1.12 | Glyma04g24430.1 | Unknown |
| GM17124P045J12 | −0.43 | −0.51 | −0.76 | Glyma18g06510.1 | Cinnamoyl CoA reductase |
| GM12235P032N19 | −0.47 | −0.46 | −1.47 | Glyma09g34410.1 | Protein kinase |
| GM07160P019K08 | −0.69 | −0.80 | −0.92 | Glyma12g06760.2 | Unknown |
| GM14246P038B14 | −1.12 | −0.66 | −0.69 | Glyma10g06620.1 | RNA‐binding protein |
| GM17482P046I10 | −1.12 | −0.86 | −1.26 | Glyma11g11350.3 | Unknown |
| GM27219P071O03 | −1.32 | −1.15 | −1.49 | Glyma11g11350.3 | Nodulin |
| GM25844P068E20 | −1.46 | −1.24 | −1.79 | Glyma12g03520.2 | Unknown |