Table 6.

Top 31 genes modulated in expression in OxO (the transgenic soybean expressing oxalate oxidase) and its parent AC (AC Colibri) after infiltration with oxalic acid, water at pH 5.5 or water at pH 2.4, based on the microarray results. These data were used in the comparison with the RNA‐seq results in Fig. 3

Oligo array ID	Best match to Glyma models	Short annotation	DR	Comparison
GM18681P049K09	Glyma18g43650.1	Ferritin	UP	OA vs. H2O at pH 2.4 in OxO
GM18751P049N07	Glyma18g43650.1	Ferritin	UP	OA vs. H2O at pH 2.4
GM14987P040A11	Glyma03g06420.2	Ferritin 2	UP	OA vs. H2O at pH 2.4 in OxO
GM05373P014P21	Glyma11g35610.1	Ferritin 3	UP	OA vs. H2O at pH 2.4
GM12232P032N16	Glyma01g31300.1	Ferritin 2	UP	OA vs. H2O at pH 2.4
GM18577P049G01	Glyma14g06160.1	Ferritin 4	UP	OA vs. H2O at pH 2.4 in OxO
GM37303P098C07	Glyma01g36190.2	Auxin related	UP	OA vs. H2O at pH 5.5 in AC
GM32514P085K18	Glyma01g02580.1	CAD	UP	OA vs. H2O at pH 5.5 in AC
GM35484P093G12	Glyma02g43990.2	Glucosidase	UP	OA vs. H2O at pH 5.5 in AC
GM37068P097I12	Glyma08g18220.1	No hits	UP	OA vs. H2O at pH 5.5 in AC
GM03538P010D10	Glyma13g36110.1	No hits	UP	OA vs. H2O at pH 5.5 in AC
GM18756P049N12	Glyma11g01350.2	CHS	UP	OA vs. H2O at pH 5.5 in AC
GM00967P003I07	Glyma01g43880.1	CHS	UP	OA vs. H2O at pH 5.5
GM09502P025L22	Glyma06g12890.3	PR protein	UP	OA vs. H2O at pH 5.5 in AC
GM36533P096C05	Glyma09g03100.1	Electron carrier	UP	OA vs. H2O at pH 5.5
GM37533P098L21	Glyma18g44310.1	Cationic peroxidase	UP	OA vs. H2O at pH 5.5 in AC
GM34930P091P10	Glyma09g41450.1	Peroxidase	UP	OA vs. H2O at pH 5.5 in AC
GM36297P095I09	Glyma03g37390.1	Pectinesterase	UP	OA vs. H2O at pH 5.5
GM18021P047O21	Glyma06g26610.1	Blue copper‐binding protein	UP	OA vs. H2O at pH 5.5
GM32575P085N07	Glyma08g02160.1	No hits	UP	OA vs. H2O at pH 5.5
GM12095P032H23	Glyma19g45030.1	No hits	DOWN	OA vs. H2O at pH 5.5 in AC
GM34828P091L04	Glyma08g28370.1	CONSTANS‐like	DOWN	OA vs. H2O at pH 5.5 in AC
GM18471P049B15	Glyma15g06270.1	Unknown	DOWN	OA vs. H2O at pH 5.5 in AC
GM08939P024E11	Glyma10g12370.1	No hits	DOWN	OA vs. H2O at pH 5.5 in AC
GM22661P060A05	Glyma07g08150.1	Unknown	DOWN	OA vs. H2O at pH 5.5 in AC
GM18501P049C21	Glyma16g10880.3	Terpenoids	DOWN	OA vs. H2O at pH 5.5 in AC
GM17072P045H08	Glyma08g41460.2	Aminotransferase	DOWN	OA vs. H2O at pH 5.5 in AC
GM24040P063J16	Glyma17g04650.1	No hits	DOWN	OA vs. H2O at pH 5.5 in AC
GM07660P020P04	Glyma14g03580.1	No hits	DOWN	OA vs. H2O at pH 5.5 in AC
GM11550P031B06	Glyma02g45170.1	No hits	DOWN	OA vs. H2O at pH 5.5 in AC
GM23696P062L08	Glyma11g21400.1	No hits	DOWN	H2O at pH 2.4 vs. H2O at pH 5.5

CAD, cinnamyl‐alcohol dehydrogenase; CHS, chalcone synthase; DR, direction of differential expression; OA, oxalic acid; PR, pathogenesis related. Italic oligo ID did not have a match in the RNA‐seq experiment.