Table 3.
Ten most common protein families with their accession numbers of the Pfam and InterPro databases. The target names and descriptions are specified in the last two columns. The fourth column shows the share of contigs assigned with that Pfam domain
| Pfam | InterPro | Number | Percentage | Target name | Description of target |
|---|---|---|---|---|---|
| PF00069 | IPR000719 | 178 | 1.67 | Pkinase | Protein kinase domain |
| PF07714 | IPR001245 | 135 | 1.27 | Pkinase_Tyr | Protein tyrosine kinase |
| PF00400 | IPR001680 | 115 | 1.08 | WD40 | WD domain, G‐β repeat |
| PF00071 | IPR013753 | 111 | 1.04 | Ras | Ras family |
| PF00112 | IPR000668 | 104 | 0.98 | Peptidase_C1 | Papain family cysteine protease |
| PF00153 | IPR001993 | 86 | 0.81 | Mito_carr | Mitochondrial carrier protein |
| PF00025 | IPR006689 | 84 | 0.79 | Arf | ADP‐ribosylation factor family |
| PF08477 | IPR013684 | 79 | 0.74 | Miro | Miro‐like protein |
| PF00076 | IPR000504 | 71 | 0.67 | RRM_1 | RNA recognition motif |
| PF14259 | IPR000505 | 64 | 0.60 | RRM_6 | RNA recognition motif |