Table 3.
Oligonucleotide primers.
| Primer name | Primer sequence 5′–3′ | Target gene or location | Reference |
|---|---|---|---|
| HL1‐Fa | GGTGTCGGTAAAACCACTTTGGC | soj (PPHGI‐1, pph01) | Lovell et al. (2009) |
| HL1‐Ra | CCTCTACGGCGGATTCAGTCATC | ||
| HL4‐Fa | GGTCTGACAGTCCTTATCACAGC | Bacteriophytochrome (PPHGI‐1, pph29) | Lovell et al. (2009) |
| HL4‐Ra | GTTCTTACCCTCTCGACGCTCC | ||
| HL10‐Fc | ATTGCTGGGTGCCGGTATGG | virB4 (PPHGI‐1, pph84) | Lovell et al. (2009) |
| HL10‐Rc | GGCACAGGTTTGCAACATGC | ||
| IntF | GAACTGACCCAGGAGTACATCC | xerC (PPHGI‐1, pph100) | Pitman et al. (2005) |
| IntR | CGTTCCAGTCGATAGAACC | ||
| avrPphBA1 | GCGATTGCGTGTCCTTGA | avrPphB (PPHGI‐1, pph16) | Pitman et al. (2005) |
| avrPphBS1 | CTGTAAGACCTGAGCCTG | ||
| avrPphEF | ATCGTCATGGACCCGTGGTC | avrPphE | Lovell et al. (2009) |
| avrPphER | GACCGTCTTGACGCCTTCGG | ||
| virPphAF | CTCGGTGCTCGCTAACGAGC | virPphA | This study |
| virPphAR | GAGCTATATCCAAGGCTGCGC | ||
| LJatt | ATGTGCGATGAGGTCGAATATGC | Circular intermediate | Pitman et al. (2005) |
| Lratt | TATGCGTGGCCTCCAGTAGCTCTG | ||
| delF | CATTACAGCCGGTCACAGATG | att site | This study |
| delR | GGAGTCGCCCTCTGAGGGCA | ||
| oriVFA | ATGATGCACCGAATGCCGTGG | oriVA | This study |
| oriVRA | GATGCGGTTGAGGATGTTGGC | ||
| oriVFB | CCGCAAGATCGTGACGAGTC | oriVB | This study |
| oriVRB | GAATCACCCTGATCGGCGCT |