Table 3.
Primers used throughout this study.
Application | Primer sequence | Amplicon size (bp) |
---|---|---|
Vector construction | ||
TRI6senseF‐NcoI* | 5′‐CCTCCATGGTCGTGTTGCGTCTCCCGATCC‐3′ | 570 |
TRI6senseR‐AscI | 5′‐GCAGGCGCGCCACCCTGCTAAAGACCCTCAG‐3′ | |
TRI6antisenseF‐NotI | 5′‐CTTTGATGCGGCCGCGTCTCCCGATCCTG‐3′ | 570 |
TRI6antisenseR‐BamHI | 5′‐GCATGGGATCCACCCTGCTAAAGACCCTCAG‐3′ | |
Real‐time qRT‐PCR | ||
TRI5forb | 5′‐ACCCTCAATTCCTTCGTCGTATG‐3′ | 141 |
TRI5revb | 5′‐CCCAAACCATCCAGTTCTCCATC‐3′ | |
TRI6forb | 5′‐TTATCGCCCTTCCCACCTTCAC‐3′ | 90 |
TRI6revb | 5′‐TAAAGTCCCGTCCGCTCTCAAAG‐3′ | |
18Sforb | 5′‐TTGACCCGTTCGGCACCTTAC‐3′ | 75 |
18Srevb | 5′‐AAGTTTCAGCCTTGCGACCATAC‐3′ | |
tubfor | 5′‐TTCCAAATCACCCACTCTC‐3′ | 104 |
tubrev | 5′‐GAAAGTTGCCATCATACGG‐3′ | |
Probes | ||
TRI6probeF1 | 5′‐GACTTTGACAACTTCCCCACAT‐3′ | 478 |
TRI6probeR2 | 5′‐AGTGATCTCGCATGTTATCCAC‐3′ | |
18S‐Forward | 5′‐CCTTAACGAGGAACAATTGGAG‐3′ | 514 |
18S‐Reverse | 5′‐CCCTAGTCGGCATAGTTTATGG‐3′ | |
Restriction analysis of TRI4–TRI6–TRI5 cluster | ||
H‐11 For4 | 5′‐GTGAACTTCGCGGGCGTTTACTC‐3′ | 5408 |
H‐11 Rev13 | 5′‐TCCGGCTTGAAGGTCGTCAAAAT‐3′ |
Restriction sites are given in italic.