Table 1.
Primer name | Primer sequence (5′–3′)* | Expected product size (bp) |
---|---|---|
VM1‐F† | TTGTCCAAAATCTGCTCGTG | 481 |
VM1‐R | TGTAATTCCTGCTCCTGCAA | |
VM2‐F† | TTCTCCCTTTTCGATCCGTA | 374 |
VM2‐R | TTTTGATGCATCTCCAGCAG | |
VV1‐F | ACAGCTCCAGGAGATTGGAA | 268 |
VV1‐R | CTGAAGTGTGCCTGTGGAGA | |
VV2‐F | TCTGAGATCTCCAGCCAGGT | 639 |
VV2‐R | GACAGTTCCAGCACAGCAGA | |
VV3‐F | TTGCCAAGAATTCCTCCAAG | 376 |
VV3‐R | AAGTTCTTGTCGGCAAGGTG | |
VV4‐F | GAGCAACACGAGTCAACGAA | 784 |
VV4‐R | TCTCCACAGGCACACTTCAG | |
VV5‐F‡ | CCATGGAGGTTGACCTGTCT | 588 |
VV5‐R | ACCCCTCTGTCTTCCCAACT | |
VV5bis‐F§ | CGCACCTTCATCACAGAAGA | 628 |
VV5bis‐R | TACCAGATGGGGAGAAATCG | |
VV6‐F | GCATGAAGCATGACTGGAGA | 264 |
VV6‐R | AATGCATAAGGGCCTCGAAT |
Primer annealing temperature: 60 °C.
Primer pairs ‘VM’ amplify the junction between the Musa genome and endogenous Banana streak virus (eBSV); primer pairs ‘VV’ amplify the internal fragment junctions within eBSGFV.
Primer pairs characterize eBSGFV‐9.
Primer pairs external to primer ‡ on the same DNA fragment.