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. 2008 Nov 20;10(2):189–200. doi: 10.1111/j.1364-3703.2008.00521.x

Figure 3.

Figure 3

Unrooted evolutionary tree of AroQγ chorismate mutases (CMs) constructed with paup* 4.0. Nucleotide sequences were selected using TBLASTN searches with HsCM1 as query. gi|77799300 (Meloidogyne arenaria) was not included in the phylogenetic analysis as the corresponding protein lacked most active site residues, indicating that it is deduced from a pseudogene accumulating random mutations. Bootstrap values > 80 are indicated at each node; they were calculated from 1000 repetitions. The monophyletic cluster of nematode sequences is shaded in grey. Accession numbers and species names are listed as appearing in the tree (clockwise starting from the nematode sequences). Sequences derived from different species of one genus are listed by their accession number, otherwise the species name is given. MjCM, gi|5353513 Meloidogyne javanica; MaCM, gi|82621736 Meloidogyne arenaria; MiCM2, gi|40037061 Meloidogyne incognita; MiCM1, gi|40037053 Meloidogyne incognita; GpCM, gi|20330094 Globodera pallida; HgCM, gi|65431227 Heterodera glycines; HsCM2, gi|74422700 Heterodera schachtii; HsCM1, gi|74422698 Heterodera schachtii; gi|148271178, Clavibacter michiganensis; gi|145220606, Mycobacterium gilvum; gi|118467340, Mycobacterium smegmatis; gi|57116681, (*MtCM) Mycobacterium tuberculosis; gi|118462219, Mycobacterium avium; gi|134096620, Saccharopolyspora erythraea; gi|10956617, Rhodococcus equi; gi|111017022, Rhodococcus sp. RHA1; gi|149133398, Burkholderia ubonensis; gi|78064658, Burkholderia sp. 383; gi|115280044, Burkholderia ambifaria; gi|172059067, Burkholderia ambifaria; gi|118028939, Burkholderia phymatum; gi|91781384, Burkholderia xenovorans; gi|17548221, Ralstonia solanacearum; gi|121530225, Ralstonia pickettii; gi|71276019, Xylella fastidiosa; gi|78045556, Xanthomonas campestris; gi|167731156, Xanthomonas campestris; gi|77456228, Pseudomonas fluorescens; gi|153901725, Salmonella enterica; gi|146309667, Enterobacter sp. 638; gi|404036, Pantoea agglomerans; gi|157368249, Serratia proteamaculans; gi|126640115, Acinetobacter baumannii; gi|77963051, Yersinia mollaretii.