Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2019 Jul 19;12:441. doi: 10.1186/s13104-019-4473-z

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2019

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

PMC Copyright notice

Fig. 1 — Overview and biological case examples of RepViz using histone modification data. a Overview of the main functions implemented in the software. b Example of a promoter region marked by H3K27Ac (GSE85467), where the mean signal in the second biological condition is driven by a single outlier replicate, but still leads to a significant differential peak call by multiple differential peak callers. Five replicates in two biological conditions are displayed in the first two panels and their mean signals in the third panel. The fourth panel is a visualization of the called peaks, where the uppermost row is from a peak caller MACS2 (PC) and the other rows are from differential peak callers (DP) (Additional file 1: Table S2). The lowest panel is the genomic track