Table 1.

Probe Sets Used to Distinguish between Six Codons at HIV-1 RT Codon 103

Probe set	Codon 103	Probe sequence
1	AAA	linker-5′-GTACTGTTACTGATTTTTTCTTTTTTAAACCTGC-blocker
1	AAG	linker-5′-GTACTGTTACTGATTTCTTCTTTTTTAAACCTGC-blocker
1	AGA	linker-5′-GTACTGTTACTGATTTTCTCTTTTTTAAACCTGC-blocker
1	AAC	linker-5′-GTACTGTTACTGATTTGTTCTTTTTTAAACCTGC-blocker
1	AAT	linker-5′-GTACTGTTACTGATTTATTCTTTTTTAAACCTGC-blocker
1	AGC	linker-5′-GTACTGTTACTGATTTGCTCTTTTTTAAACCTGC-blocker
2	AAA	linker-5′-GTACTGTTACTGATTTTTTCTTTTTTAACCCTGC-blocker
2	AAG	linker-5′-GTACTGTTACTGATTTCTTCTTTTTTAACCCTGC-blocker
2	AGA	linker-5′-GTACTGTTACTGATTTTCTCTTTTTTAACCCTGC-blocker
2	AAC	linker-5′-GTACTGTTACTGATTTGTTCTTTTTTAACCCTGC-blocker
2	AAT	linker-5′-GTACTGTTACTGATTTATTCTTTTTTAACCCTGC-blocker
2	AGC	linker-5′-GTACTGTTACTGATTTGCTCTTTTTTAACCCTGC-blocker
3	AAA	linker-5′-GTACTGTCATTGATTTTTTCTTTTTTAACCCTGC-blocker
3	AAG	linker-5′-GTACTGTCATTGATTTCTTCTTTTTTAACCCTGC-blocker
3	AGA	linker-5′-GTACTGTCATTGATTTTCTCTTTTTTAACCCTGC-blocker
3	AAC	linker-5′-GTACTGTCATTGATTTGTTCTTTTTTAACCCTGC-blocker
3	AAT	linker-5′-GTACTGTCATTGATTTATTCTTTTTTAACCCTGC-blocker
3	AGC	linker-5′-GTACTGTCATTGATTTGCTCTTTTTTAACCCTGC-blocker

Probe set 1 was complementary to the most commonly occurring flanking sequence in the low- and middle-income countries sequence data set. Probe sets 2 and 3 differed from probe set 1 by one and three nucleotides, respectively, shown in bold. The central codon position was complementary to the six most commonly reported position 103 codons.