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. Author manuscript; available in PMC: 2019 Jul 22.
Published in final edited form as: Cell. 2018 Mar 22;173(2):499–514.e23. doi: 10.1016/j.cell.2018.02.037

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Living Colors A.v. Monoclonal GFP Antibody (JL-8) Clontech Laboratories Cat # 632381; RRID:AB_2313808
c-Myc (D84C12) Rabbit mAb Cell Signaling Technology Cat # 5605S; RRID:AB_1903938
GAPDH rabbit polyclonal Antibody (FL-335) Santa Cruz Biotecnology Cat # sc-25778; RRID:AB_10167668
Mouse monoclonal anti-vinculin Antibody Sigma-Aldrich Cat # V9131; RRID:AB_477629
anti-p53 ser15 rabbit antibody #9284 Cell Signaling Technology Cat # 9284s
anti-p21 antibody Calbiochem/EMD Cat # OP64
E2F1 antibody Cell Signaling Technology Cat # #3742
Chemicals, Peptides, and Recombinant Proteins
Clontech Labs Doxycycline (5g) Fisher Scientific Cat # NC0424034
Critical Commercial Assays
GeneJET Genomic DNA Purification Kit Thermo Fisher Scientific Cat # K0722
NEBNext Ultra RNA Library Prep Kit for Illumina NEB E7530S
RNeasy Plus Mini Kit QIAGEN 74134
NEBNext Multiplex Oligos for Illumina (Index Primers Set 1) NEB E7335S
NEBNext Poly(A) mRNA Magnetic Isolation Module NEB E7490S
Deposited Data
Human cancer gene expression data TCGA https://tcga-data.nci.nih.gov/docs/publications/tcga
CCLE cancer gene expression data Cancer Cell Line Encyclopedia Barretina et al., 2012
SCNA data TCGA https://tcga-data.nci.nih.gov/docs/publications/tcga?
RNA-seq This paper GSE109326
Experimental Models: Cell Lines
rtTA-HMEC clone 1-9 This paper N/A
rtTA-HPNE clone 5-12 This paper N/A
rtTA-IMR90 cells This paper N/A
rtTA-MCF7 cells This paper N/A
rtTA-HMEC 1-9 p53−/− This paper N/A
hTERT-HMECs Solimini et al., 2012 N/A
hTERT-IMR90s This paper N/A
hTERT-HPNEs Campbell lab N/A
MCF7s Polyak lab N/A
Experimental Models: Organisms/Strains
NSG (NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ) The Jackson Laboratory Cat # 005557; RRID:IMSR_JAX:005557
Recombinant DNA
Human genome-scale ORF Libraries 1 and 2 This paper N/A
HMEC ORF sublibrary This paper N/A
pInducer-rtTA-Neo This paper N/A
pHAGE-TRE-ORF-BC-3′ This paper N/A
pInducer20-EGFP This paper N/A
pX330-U6-Chimeric_BB-CBh-hSpCas9 Cong et al., 2013; Addgene Plasmid #42230
lentiCRISPR V2 puro vector Addgene Plasmid #52961
psPax2 Addgene Plasmid #12260
pMD2.G This paper Plasmid #12259
E2F1sh-1 GGAGTTCATCAGCCTTTCCCCA This paper N/A
E2F1sh-2 TAAGAGCAAACAAGGCCCGATC This paper N/A
E2F1sh-3 GTGGACTCTTCGGAGAACTTT This paper N/A
E2F1sh-4 ATGAGACCTCACTGAATCTGAC This paper N/A
OR11L1 -sh (control sh, ctr-sh) ACCACCTGTTGCCTGAAATCAAT This DaDer N/A
Sequence-Based Reagents
PCR Primer ORF.BC1.For: CCAGTAGGTCCACTATGAGT This paper N/A
PCR Primer ORF.BC1.Rev: CTAGTTCCGCTTACACAGCT This paper N/A
PCR Primer ISP-ORF.BC1 .For: GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCTCCAGTAGGTCCACTATGAGT This paper N/A
PCR Primer P5-ORF.BC1.Rev: AATGATACGGC GACCACCGACTAGTT CCGCTTACACAGCT This paper N/A
PCR Primer P7-Index-ISP: CAAGCAGAAGACGGCATACGAGATxxxxxxxGTGACTGGAGTT CAGACGTGT Meyer and Kircher, 2010 N/A
Sequencing Primer heyME19: GCGACCACCGACTAGTTCCGCTTACACAGCT This paper N/A
TP53 sgRNA: GTTGCAAACCAGACCTCAGG This paper N/A
Software and Algorithms
edgeR Robinson et al., 2010 http://www.bioconductor.org/packages/release/bioc/html/edgeR.html; RRID:SCR_012802
GSEA Mootha et al., 2003; Subramanian et al., 2005 http://software.broadinstitute.org/gsea/index.jsp; RRID:SCR_003199
Bowtie 2 Langmead et al., 2009; Langmead and Salzberg 2012 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
limma Ritchie et al., 2015 https://bioconductor.org/packages/release/bioc/html/limma.html
Mageck Li etal., 2014 https://sourceforge.net/projects/mageck/
GISTIC2 Mermel et al., 2011 http://archive.broadinstitute.org/cancer/cga/gistic
HHS Vulnerability Disclosure