TABLE 1. Summary of the raw data for Illumina paired-end (PE) and mate-pair (MP) libraries for whole-genome sequencing of Abies alba.
Library | Read length (bp) | Insert size (kb) | Mean fragment size (bp) | Read Pairs (million) | Yield (Mb) | Coverage | Avg. Phix Error R1 (%) | Avg. Phix Error R2 (%) |
---|---|---|---|---|---|---|---|---|
PE300-1 | 2 x 151 | — | 304 | 3,274 | 989,029 | 57.103 | 0.646 | 0.908 |
PE300-2 | 2 x 151 | — | 307 | 1,886 | 569,617 | 32.888 | 0.883 | 1.126 |
PE300-3 | 2 x 151 | — | 312 | 1,066 | 322,181 | 18.602 | 0.768 | 1.081 |
MP1500 | 2 x 101 | 1.5 | — | 1,255 | 253,529 | 14.638 | 0.214 | 0.32 |
MP3000 | 2 x 101 | 3 | — | 1,277 | 257,985 | 14.895 | 0.214 | 0.32 |
MP8000 | 2 x 101 | 8 | — | 1,255 | 253,590 | 14.641 | 0.214 | 0.32 |
Total PE | 6,226 | 1,880,827 | 108.593 | |||||
Total MP | 3,787 | 765,104 | 44.175 |