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. 2019 Jul 22;9:10573. doi: 10.1038/s41598-019-45866-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Transcripts differentially expressed in rice roots colonised by H. seropedicae were grouped according to metabolic categories according to MapMan. Overview metabolism is shown in Panel A and biotic and abiotic stress in Panel B. (A) Up-regulated genes are shown in the right-hand column (in gray) and down-regulated genes in the left column (in black). Numbers of regulated genes and total numbers of expressed genes are shown for each category. ¹TCA cycle/organic acids: ²oxidative pentose phosphate pathway; ³mitochondrial electron transport/ATP synthesis; ⁴gluconeogenesis/glyoxylate cycle; ⁵cofactor and vitamin synthesis. (B) The scheme was constructed using only genes with fold change ≥2; ≤2. Small squares represent up-regulated (blue) or down-regulated (red) genes.