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. 2019 Jul 22;9:10573. doi: 10.1038/s41598-019-45866-w

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Differentially expressed genes in rice roots following colonisation by H. seropedicae. Genes involved in siderophore synthesis and transport, the methionine salvage pathway and ethylene synthesis are shown. Numbers in parentheses represent the fold change. H. seropedicae SmR1 induces methionine recycling and mugineic acid (MA) synthesis as well as the expression of transporters involved in iron metabolism. The expression of those genes marked with an asterisk was confirmed by RT-qPCR Abbreviations: AdoMet, S-adenosylmethionine; ACC, 1-aminocyclopropane-1-carboxylate; ACS, 1-aminocyclopropane-1-carboxylate synthase; ACO, 1-aminocyclopropane-1-carboxylate oxidase; MTA, 5′-methylthioadenosine; MTR, 5′-methylthioribose; MTK, methylthioribose kinase; MTR-1-P, 5′-methylthioribose-1-phosphate; KMTB, 2-keto-4-methylthiobutyrate; ARD, acireductone dioxygenase; SAMS, S-adenosylmethionine synthetase; NAS, nicotianamine synthase; NAAT nicotianamine aminotransferase; DMAS, deoxymugineic acid synthase; Tom1, transporter of mugineic acid 1; ENA1 (efflux transporters of nicotianamine 1); Nramp6, Natural Resistance-Associated Macrophage Protein; IRT2(iron-regulated transporter 2); YSL16 (yellow strip-like gene 16); YSL15 (yellow strip-like gene 15).