Table 1.
Rice genes modulated by colonisation with H. seropedicae that are involved in phyto-hormone signalling and the MTA cycle.
| Locus name | Gene product/description* | Fold-change | Pvalue |
|---|---|---|---|
| LOC_Os01g67030.1 | Auxin-responsive protein, putative, expressed | 2.5 | 4.99E-06 |
| LOC_Os08g24790.1 | AIR12, putative, expressed | 0.49 | 0.04 |
| LOC_Os09g25770.1 | Auxin-induced protein 5NG4, putative, expressed | 0.55 | 0.01 |
| LOC_Os05g01570.1 | Auxin-induced protein 5NG4, putative, expressed | 0.40 | 0.05 |
| LOC_Os09g28050.1 |
1-aminocyclopropane-1-carboxylate synthase family protein (ACC synthase) (RAPDB) Asparate aminotransferase (MSU) |
6.1 | 2.11E-54 |
| LOC_Os03g63900.1 | 1-aminocyclopropane-1-carboxylate oxidase 2 (ACC oxidase) | 0.50 | 7.88E-04 |
| LOC_Os01g04800.1 |
B3 DNA binding domain containing protein (MSU) APETALA2/ethylene-responsive element binding protein 129 (RAPDB) |
2.2 | 3.67E-03 |
| LOC_Os06g02220.1 | MTA/SAH nucleosidase | 2.6 | 1.83E-11 |
| LOC_Os04g57400.1 | Methylthioribose kinase | 6.1 | 3.20E-18 |
| LOC_Os04g57410.1 | Methylthioribose kinase | 10.2 | 1.16E-12 |
| LOC_Os06g04510.1 | Similar to enolase 1 | 1.9 | 0.03 |
| LOC_Os03g06620.1 | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase | 7.5 | 5.94E-65 |
| LOC_Os10g28360.1 | 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase | 0.47 | 6.14E-03 |
| LOC_Os01g22010.3 | S-adenosylmethionine synthetase (SAM) | 1.9 | 1.72E-05 |
*Gene product name/description of the both rice database were used: MSU (Rice Genome Annotation Project) and RAPDB (The Rice Annotation Project).