Table 2.
Rice genes highly regulated (fold change > 10) by inoculation with H. seropedicae.
| Locus name | Gene product/description* | Fold change | P-value |
|---|---|---|---|
| Up-regulated rice genes | |||
| LOC_Os02g20360.1 | Ttyrosine aminotransferase, putative, expressed, Similar to Nicotianamine aminotransferase A (RAPDB) | 10 | 5.24E-30 |
| LOC_Os04g57410.1 | Methylthioribose kinase, putative. Expressed | 10.2 | 1.16E-12 |
| LOC_Os03g26210.1 | Helix-loop-helix DNA-binding domain containing protein. Expressed | 12.6 | 4.10E-09 |
| LOC_Os01g72370.1 | Helix-loop-helix DNA-binding domain containing protein. Expressed | 16.4 | 3.36E-74 |
| LOC_Os11g15624.1 | Expressed protein | 17.7 | 1.22E-25 |
| LOC_Os03g13390.2 | Oxidoreductase. aldo/keto reductase family protein, putative. Expressed | 19.4 | 1.61E-10 |
| LOC_Os02g43410.1 | Transposon protein, putative. Unclassified. Expressed | 21 | 3.97E-81 |
| LOC_Os10g11889.2 | Expressed protein | 23 | 3.29E-113 |
| LOC_Os01g65110.1 | POT family protein. Expressed | 26 | 6.63E-14 |
| LOC_Os07g15460.1 | Metal transporter Nramp6, putative. Expressed | 27 | 3.56E-61 |
| LOC_Os03g03724.1 | Expressed protein | 28 | 0.02 |
| LOC_Os03g19427.1 | Nicotianamine synthase, putative. expressed | 32 | 1.02E-22 |
| LOC_Os03g46454.1 | Metal cation transporter, putative. expressed | 34 | 4.02E-08 |
| LOC_Os06g19095.1 | Expressed protein | 40 | 1.51E-14 |
| LOC_Os11g04020.1 | Major facilitator superfamily antiporter, putative. expressed | 40 | 8.84E-51 |
| LOC_Os03g19420.2 | Nicotianamine synthase, putative. expressed | 52 | 5.57E-80 |
| LOC_Os12g18410.1 | Expressed protein | 70 | 2.07E-05 |
| LOC_Os03g12510.1 | Non-symbiotic hemoglobin 2, putative. expressed | 104 | 5.58E-24 |
| LOC_Os04g51660.1 | Transferase family protein, putative, expressed | 0.08 | 2.79E-03 |
| LOC_Os04g59020.1 | Integral membrane protein, putative, expressed | 0.08 | 3.41E-03 |
| LOC_Os09g23300.1 | Integral membrane protein, putative, expressed | 0.06 | 3.63E-05 |
| LOC_Os11g15340.2 |
SAM dependent carboxyl methyltransferase family protein, putative, expressed |
0.03 | 1.54E-03 |
| LOC_Os01g55690.1 | Glutelin, putative, expressed | 0.02 | 0.02 |
| LOC_Os12g38040.1 | Metallothionein family protein, expressed | 0.02 | 3.72E-22 |
| LOC_Os10g07556.1 | Wall-associated receptor kinase-like 22 precursor, putative, expressed | 0.01 | 5.22E-08 |
*Gene product name/description of the both rice database were used: MSU (Rice Genome Annotation Project) and RAPDB (The Rice Annotation Project).