Table 3.
Differentially expressed genes in rice roots colonised by H. seropedicae involved in uptake and transport of metals.
| Locus name | Gene product/description* | Fold change | p-value |
|---|---|---|---|
| LOC_Os01g22010.3 | S-adenosylmethionine synthetase, putative, expressed | 1.9 | 1.72E-05 |
| LOC_Os03g19427.1 | Nicotianamine synthase. putative. expressed | 32 | 1.02E-22 |
| LOC_Os03g19420.2 | Nicotianamine synthase. putative. expressed | 52 | 5.57E-80 |
| LOC_Os02g20360.1 | tyrosine aminotransferase, putative, expressed (MSU), Similar to Nicotianamine aminotransferase (RAPDB) | 10 | 5.24E-30 |
| LOC_Os03g13390.2 |
Oxidoreductase. aldo/keto reductase family protein, putative. Expressed (MSU) Similar to NADPH-dependent codeinone reductase, gene name: deoxymugineic acid synthase1 (RAPDB) |
19.4 | 1.61E-10 |
| LOC_Os11g04020.1 | Major facilitator superfamily antiporter, putative, expressed (TOM1) | 40 | 8.84E-51 |
| LOC_Os11g05390.1 | Transporter, major facilitator family, putative, expressed (ENA1) | 3.1 | 5.80E-03 |
| LOC_Os03g46470.1 | Metal cation transporter, putative, expressed (OsIRT1) | 4.3 | 4.09E-14 |
| LOC_Os03g46454.1 | Metal cation transporter, putative, expressed (OsIRT2) | 34 | 4,02E-08 |
| LOC_Os04g45900.1 |
Transposon protein, putative, unclassified, expressed (MSU) Similar to Metal-nicotianamine transporter YSL2, Gene symbol synonym: OsYSL16 (RAPDB) |
3.2 | 1.23E-07 |
| LOC_Os02g43410.1 |
Transposon protein, putative. Unclassified. Expressed (MSU) Iron-phytosiderophore transporter, Iron homeostasis (Os02t0650300-01); Similar to Iron-phytosiderophore transporter YSL15. (Os02t0650300-02) (RAP-DB) |
21 | 3.97E-81 |
| LOC_Os07g15460.1 | Metal transporter Nramp6, putative. Expressed | 27 | 3.56E-61 |
*Gene product name/description of the both rice database were used: MSU (Rice Genome Annotation Project) and RAPDB (The Rice Annotation Project).