Table 2.
Traita | QTL | Envb | Flanking markers | Location | Nearest locus | LOD | Additivec | PVEd(%) |
---|---|---|---|---|---|---|---|---|
HSW | qHSWA01.1 | 2016CQ | Marker1095Marker1475 | 83.385 | Marker1766 | 3.34 | 0.52 | 17.1 |
2017AY | Marker1050Marker1444 | 80.444 | Marker1682 | 3.07 | 0.45 | 15.2 | ||
qHSWA01.2 | 2016CQ | Marker2119Marker2188 | 105.852 | Marker2140 | 2.33 | 0.44 | 12.3 | |
2017AY | Marker2060Marker2271 | 108.794 | Marker2270 | 2.76 | 0.43 | 13.7 | ||
qHSWA09.1 | 2016CQ | Marker11851Marker11864 | 117.677 | Marker11859 | 2.18 | 0.43 | 11.5 | |
qHSWA11.1 | 2016CQ | Marker13572Marker13721 | 59.099 | Marker13615 | 3.87 | 0.60 | 19.5 | |
2016HN | Marker13572Marker13746 | 75.349 | Marker13740 | 2.68 | 0.38 | 14 | ||
2017AY | Marker13720Marker13746 | 75.349 | Marker13740 | 2.65 | 0.44 | 13.2 | ||
qHSWD02.1 | 2017AY | Marker18193Marker18204 | 40.414 | Marker18200 | 2.07 | 0.38 | 10.5 | |
qHSWD02.2 | 2016CQ | Marker18224Marker18299 | 51.754 | Marker18289 | 2.03 | 0.41 | 10.8 | |
qHSWD03.1 | 2016CQ | Marker18918Marker18934 | 107.899 | Marker18928 | 9.22 | 0.83 | 40.4 | |
2016HN | Marker18918Marker18934 | 106.722 | Marker18921 | 9.37 | 0.66 | 40.9 | ||
2017AY | Marker18918Marker18940 | 107.899 | Marker18928 | 9.01 | 0.76 | 38.3 | ||
qHSWD05.1 | 2017AY | Marker19701Marker19762 | 119.944 | Marker19721 | 2.48 | 0.56 | 12.4 | |
qHSWD05.2 | 2016CQ | Marker20000Marker20073 | 217.105 | Marker20039 | 3.36 | 0.61 | 17.2 | |
qHSWD09.1 | 2016HN | Marker22228Marker22277 | 17.959 | Marker22254 | 2.27 | 0.34 | 12 | |
2017AY | Marker22228Marker22277 | 18.555 | Marker22255 | 3.75 | 0.50 | 18.2 | ||
qHSWD09.2 | 2017HN | Marker22575Marker22599 | 116.855 | Marker22592 | 2.23 | 0.35 | 11.8 | |
2017AY | Marker22575Marker22599 | 114.931 | Marker22590 | 3.81 | 0.51 | 18.5 | ||
qHSWD13.1 | 2017HN | Marker25633Marker25644 | 24.158 | Marker25641 | 2.54 | 0.36 | 13.3 | |
2017AY | Marker25633Marker25662 | 24.158 | Marker25641 | 4.07 | 0.52 | 19.6 | ||
HKW | qHKWA01.1 | 2016CQ | Marker1095Marker1248 | 83.973 | Marker1779 | 3.14 | 0.32 | 17.6 |
2016HN | Marker1095Marker1796 | 82.797 | Marker1750 | 2.44 | 0.28 | 12.9 | ||
2017AY | Marker1095Marker1796 | 83.973 | Marker1777 | 3.51 | 0.39 | 18.3 | ||
qHKWA01.2 | 2016CQ | Marker2060Marker2271 | 107.029 | Marker2195 | 2.77 | 0.30 | 15.6 | |
2016HN | Marker2119Marker1822 | 107.029 | Marker2195 | 2.32 | 0.28 | 12.4 | ||
2017AY | Marker2060Marker2271 | 108.794 | Marker2270 | 2.89 | 0.36 | 15.3 | ||
qHKWA11.1 | 2016CQ | Marker13724Marker13746 | 75.349 | Marker13740 | 2.47 | 0.30 | 14.1 | |
2016HN | Marker13572Marker13746 | 75.349 | Marker13740 | 2.94 | 0.32 | 15.4 | ||
2017AY | Marker13721Marker13746 | 75.349 | Marker13740 | 2.4 | 0.34 | 12.9 | ||
qHKWD01.1 | 2016HN | Marker17803Marker17824 | 69.664 | Marker17810 | 2.05 | 0.27 | 11 | |
qHKWD01.2 | 2016CQ | Marker18034Marker18045 | 106.31 | Marker18037 | 2.15 | 0.27 | 12.4 | |
qHKWD03..1 | 2016CQ | Marker18922Marker18940 | 107.899 | Marker18928 | 14.15 | 0.61 | 58.1 | |
2016HN | Marker18918Marker18934 | 107.899 | Marker18928 | 15.25 | 0.62 | 58 | ||
2017AY | Marker18922Marker18940 | 112.14 | Marker18935 | 10.64 | 0.65 | 45.8 | ||
qHKWD09..1 | 2017AY | Marker22228Marker22290 | 18.555 | Marker22255 | 3.83 | 0.41 | 19.8 | |
qHKWD13..1 | 2016CQ | Marker25627Marker25644 | 24.158 | Marker25641 | 2.52 | 0.29 | 14.3 | |
2017AY | Marker25627Marker25644 | 24.158 | Marker25641 | 3.15 | 0.38 | 16.6 | ||
TKL | qTKLA05.1 | 2016CQ | Marker6368Marker6440 | 49.956 | Marker6433 | 4.04 | 1.27 | 20.8 |
2016HN | Marker6391Marker6437 | 49.956 | Marker6433 | 2.18 | 1.00 | 11.5 | ||
2017AY | Marker6368Marker6437 | 45.089 | Marker6388 | 3.82 | 1.45 | 19.1 | ||
qTKLA11.1 | 2016CQ | Marker12954Marker13001 | 29.286 | Marker12983 | 2.3 | 0.99 | 12.4 | |
qTKLA12.1 | 2016CQ | Marker13902Marker13921 | 6.443 | Marker13906 | 2.5 | 1.05 | 13.4 | |
2016HN | Marker13904Marker13922 | 6.443 | Marker13906 | 2.11 | 1.01 | 11.2 | ||
qTKLD02.1 | 2016CQ | Marker18466Marker18541 | 72.256 | Marker18639 | 3.83 | 1.25 | 19.8 | |
2016HN | Marker18541Marker18658 | 83.832 | Marker18645 | 2.73 | 1.16 | 14.2 | ||
2017AY | Marker18441Marker18643 | 72.256 | Marker18639 | 3.22 | 1.35 | 16.3 | ||
qTKLD08.1 | 2016HN | Marker21909Marker21965 | 49.622 | Marker21942 | 2.24 | 1.02 | 11.8 | |
qTKLD13.1 | 2016CQ | Marker25619Marker25633 | 18.006 | Marker25627 | 2.29 | 0.98 | 12.4 | |
2017AY | Marker25619Marker25633 | 17.389 | Marker25620 | 2.53 | 1.22 | 13.1 | ||
TKW | qTKWA01.1 | 2016CQ | Marker1095Marker1796 | 80.444 | Marker1683 | 2.58 | 0.76 | 14 |
2016HN | Marker1651Marker1785 | 82.797 | Marker1761 | 2.26 | 0.89 | 11.9 | ||
2017AY | Marker1581Marker1599 | 77.502 | Marker1590 | 2.1 | 0.72 | 11 | ||
qTKWA08.1 | 2017AY | Marker10504Marker10552 | 69.174 | Marker10502 | 2.05 | 0.72 | 10.7 | |
qTKWA11.1 | 2016CQ | Marker13572Marker13746 | 55.26 | Marker13613 | 3.03 | 0.88 | 16.2 | |
2016HN | Marker13604Marker13722 | 57.005 | Marker13614 | 2.56 | 1.01 | 13.4 | ||
2017AY | Marker13572Marker13718 | 55.26 | Marker13613 | 2.29 | 0.80 | 11.9 | ||
qTKWD01.1 | 2017AY | Marker18034Marker18037 | 103.839 | Marker18038 | 2.14 | 0.74 | 11.2 | |
qTKWD03.1 | 2016CQ | Marker18922Marker18940 | 107.899 | Marker18928 | 14.86 | 1.63 | 58 | |
2016HN | Marker18918Marker18934 | 107.899 | Marker18928 | 12.88 | 1.93 | 51.5 | ||
2017AY | Marker18933Marker18978 | 112.14 | Marker18935 | 9 | 1.43 | 39.3 | ||
qTKWD09.1 | 2017AY | Marker22575Marker22599 | 114.931 | Marker22588 | 2.85 | 0.85 | 14.6 | |
KOC | qKOCA01.1 | 2016CQ | Marker990Marker1248 | 82.797 | Marker1750 | 2.83 | 1.13 | 14.9 |
2017AY | Marker1734Marker1798 | 83.973 | Marker1774 | 2.43 | 1.07 | 12.2 | ||
qKOCA01.2 | 2016CQ | Marker2014Marker2271 | 105.852 | Marker2138 | 3.49 | 1.25 | 18 | |
qKOCA03.1 | 2017AY | Marker4951Marker5025 | 44.143 | Marker4961 | 2.3 | 1.04 | 11.6 | |
qKOCA08.1 | 2016CQ | Marker10503Marker10582 | 72.718 | Marker10567 | 2.69 | 1.11 | 14.2 | |
qKOCA09.1 | 2016HN | Marker10981Marker11001 | 37.502 | Marker10991 | 3.69 | 1.24 | 18.7 | |
qKOCA11.1 | 2017AY | Marker13724Marker13746 | 72.492 | Marker13726 | 2.07 | 1.04 | 10.5 | |
qKOCA13.1 | 2017AY | Marker16773Marker16984 | 136.821 | Marker16970 | 2.4 | 1.07 | 12.1 | |
qKOCA13.2 | 2016CQ | Marker17148Marker17212 | 164.157 | Marker17150 | 3.32 | 1.22 | 17.2 | |
qKOCD02.1 | 2016CQ | Marker18421Marker18439 | 62.907 | Marker18431 | 3.2 | 1.20 | 16.6 | |
qKOCD03.1 | 2016CQ | Marker18933Marker18940 | 112.14 | Marker18935 | 11.48 | 2.13 | 47.9 | |
2016HN | Marker18933Marker18940 | 112.14 | Marker18935 | 3.54 | 1.26 | 18 | ||
2017AY | Marker18918Marker18978 | 135.298 | Marker18977 | 4.84 | 1.54 | 22.8 | ||
qKOCD05.1 | 2017AY | Marker19712Marker19766 | 125.411 | Marker19762 | 2.24 | 1.40 | 11.3 | |
qKOCD09.1 | 2016CQ | Marker22592Marker22602 | 120.918 | Marker22600 | 2.02 | 0.99 | 10.8 | |
2017AY | Marker22600Marker22609 | 128.058 | Marker22603 | 2.25 | 1.07 | 11.4 | ||
KPC | qKPCA01.1 | 2016CQ | Marker1050Marker1599 | 75.135 | Marker1105 | 2.87 | 0.61 | 15.1 |
qKPCA01.2 | 2017AY | Marker1766Marker1796 | 83.973 | Marker1777 | 2.1 | 1.23 | 10.7 | |
qKPCA01.3 | 2016CQ | Marker2119Marker2271 | 105.852 | Marker2140 | 3.95 | 0.70 | 20.1 | |
qKPCA08.1 | 2016CQ | Marker10273Marker10297 | 47.49 | Marker10290 | 2.16 | 0.54 | 11.6 | |
qKPCA08.2 | 2016CQ | Marker10511Marker10600 | 72.13 | Marker10561 | 2.75 | 0.59 | 14.5 | |
qKPCA09.1 | 2016HN | Marker10981Marker11001 | 37.502 | Marker10991 | 2.88 | 1.51 | 14.9 | |
qKPCA11.1 | 2017AY | Marker13724Marker13740 | 72.492 | Marker13726 | 2.12 | 1.29 | 10.7 | |
qKPCA13.1 | 2017AY | Marker17035Marker17090 | 151.357 | Marker17079 | 2.12 | 1.25 | 10.7 | |
qKPCD02.1 | 2016CQ | Marker18429Marker18433 | 62.907 | Marker18431 | 4.82 | 0.77 | 24 | |
qKPCD02.2 | 2016HN | Marker18645Marker18658 | 84.427 | Marker18646 | 2.05 | 1.32 | 10.9 | |
qKPCD03.1 | 2016CQ | Marker18922Marker18940 | 112.14 | Marker18935 | 8.81 | 1.03 | 39.4 | |
2016HN | Marker18933Marker18940 | 112.14 | Marker18935 | 11.78 | 2.81 | 48.4 | ||
2017AY | Marker18933Marker18940 | 112.14 | Marker18935 | 9.91 | 2.52 | 41.2 | ||
qKPCD09.1 | 2017AY | Marker22586Marker22599 | 116.855 | Marker22592 | 2.53 | 1.39 | 12.7 |
aHSW hundred seed weight, HKW hundred kernel weight, TKL ten kernel length, TKW ten kernel width, KOC kernel oil content, KPC kernel protein content
b2016CQ, 2016 at Chongqing; 2016HN, 2016 at Hainan; 2017AY, 2017 at Anyang
cPositive additive effects indicated that Yumian 1 alleles increased the phenotypic value, negative additive effects suggested that M11 alleles increased the phenotypic value
dphenotypic variance explained