Table 1. Characteristics of tissue specific A2ML isoforms in Tenualosa ilisha.
Organisms | Isoforms | mRNA variant ID | mRNA length (bp) | Open reading Frame (bp) | Best predicted Protein (aa) |
Exons in CDS |
5’ UTR (bp) |
3’ UTR (bp) |
---|---|---|---|---|---|---|---|---|
Homo sapiens # | Isoform a | A2ML1.a # | 5229 | 4797 | 1454 | 35 | 73 | 359 |
T. ilisha | Consensus | A2ML | 4680 | 4524 | 1508 | 35 | 47 | 109 |
Liver | IsoformX1 | 20636 | 4431 | 4128 | 1477 | 33 | 45 | 258 |
IsoformX2 | 13703 | 2035 | 1713 | 570 | 14 | 47 | 261 | |
IsoformX3 | 2188 | 2081 | 1937 | 645 | 12 | 45 | 13 | |
IsoformX4 | 19153 | 3275 | 3024 | 1007 | 24 | 145 | 107 | |
IsoformX5 | 27606 | 2587 | 2445 | 814 | 20 | 24 | 119 | |
IsoformX6 | 2280 | 1840 | 1565 | 521 | 13 | 167 | 109 | |
IsoformX7 | 9113 | 1697 | 1410 | 469 | 13 | 138 | 150 | |
Ovary | IsoformX8 | 19791 | 2481 | 894 | 753 | 18 | 104 | 114 |
IsoformX9 | 29945 | 1712 | 1518 | 505 | 12 | 86 | 108 | |
IsoformX10 | 136214 | 399 | 288 | 95 | 5 | 2 | 109 | |
IsoformX11 | 29646 | 1873 | 1762 | 505 | 12 | 245 | 110 | |
Testes | IsoformX12 | 18316 | 2519 | 2268 | 755 | 19 | 135 | 116 |
Gill | No isoform found |
# Sequence obtained from NCBIAceView database (https://www.ncbi.nlm.nih.gov/ieb/research/acembly/)