Table 1. Datasets publically available from cBioPortal and GENIE Project that were used, by disease group, with overall sample size.
| Disease | Dataset | Sample Size | Total |
|---|---|---|---|
| Bladder | BLCA_TCGA_PAN_CAN_ATLAS_2018 | 408 | 1,181 |
| DFCI-ONCOPANEL-3 | 69 | ||
| MSK-IMPACT341 | 95 | ||
| MSK-IMPACT410 | 326 | ||
| MSK-IMPACT468 | 143 | ||
| UTUC_MSKCC_2013 | 84 | ||
| VICC-01-T5A | 3 | ||
| VICC-01-T7 | 53 | ||
| Breast | BRCA_IGR_2015 | 216 | 3,442 |
| BRCA_MBCPROJECT_WAGLE_2017 | 157 | ||
| DFCI-ONCOPANEL-3 | 304 | ||
| MSK-IMPACT341 | 410 | ||
| MSK-IMPACT410 | 1,021 | ||
| MSK-IMPACT468 | 1,076 | ||
| VICC-01-T5A | 87 | ||
| VICC-01-T7 | 171 | ||
| Colorectal | CRC_MSK_2018 | 1,134 | 3,272 |
| DFCI-ONCOPANEL-3 | 351 | ||
| MSK-IMPACT341 | 209 | ||
| MSK-IMPACT410 | 906 | ||
| MSK-IMPACT468 | 465 | ||
| VICC-01-T5A | 47 | ||
| VICC-01-T7 | 160 | ||
| Esophagogastric | DFCI-ONCOPANEL-3 | 146 | 1,458 |
| EGC_MSK_2017 | 341 | ||
| ESCA_TCGA_PAN_CAN_ATLAS_2018 | 182 | ||
| MSK-IMPACT341 | 122 | ||
| MSK-IMPACT410 | 216 | ||
| MSK-IMPACT468 | 106 | ||
| STES_TCGA_PUB | 288 | ||
| VICC-01-T5A | 11 | ||
| VICC-01-T7 | 46 | ||
| HNSCC | DFCI-ONCOPANEL-3 | 83 | 1, 010 |
| HNC_MSKCC_2016 | 151 | ||
| HNSC_TCGA_PAN_CAN_ATLAS_2018 | 517 | ||
| MSK-IMPACT341 | 37 | ||
| MSK-IMPACT410 | 132 | ||
| MSK-IMPACT468 | 75 | ||
| VICC-01-T5A | 6 | ||
| VICC-01-T7 | 9 | ||
| Melanoma | 906 | ||
| MSK-IMPACT341 | 64 | ||
| MSK-IMPACT410 | 364 | ||
| MSK-IMPACT468 | 214 | ||
| VICC-01-T7 | 140 | ||
| VICC-01-T5A | 37 | ||
| Ovarian | DFCI-ONCOPANEL-3 | 125 | 1,065 |
| MSK-IMPACT341 | 88 | ||
| MSK-IMPACT410 | 139 | ||
| MSK-IMPACT468 | 155 | ||
| OV_TCGA_PUB | 489 | ||
| VICC-01-T5A | 31 | ||
| VICC-01-T7 | 38 | ||
| Prostate | DFCI-ONCOPANEL-3 | 97 | 2,251 |
| MSK-IMPACT341 | 153 | ||
| MSK-IMPACT410 | 569 | ||
| MSK-IMPACT468 | 377 | ||
| PRAD_FHCRC | 149 | ||
| PRAD_MICH | 61 | ||
| PRAD_MSKCC | 194 | ||
| PRAD_SU2C_2015 | 150 | ||
| PRAD_MSKCC_2017 | 501 | ||
| Uterine | DFCI-ONCOPANEL-3 | 120 | 1,085 |
| MSK-IMPACT341 | 119 | ||
| MSK-IMPACT410 | 258 | ||
| MSK-IMPACT468 | 326 | ||
| UCEC_TCGA_PUB | 232 | ||
| VICC-01-T7 | 19 | ||
| VICC-01-T5A | 11 |