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. 2019 Jul 23;9:10619. doi: 10.1038/s41598-019-46831-3

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© The Author(s) 2019

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Phylogenetic tree of E. marmotae and 30 representative genomes. The tree was constructed using the maximum likelihood algorithms in Phylip based on the core genome SNPs. Escherichia clade I–V are marked as C I to C V. C V belonged to the species E. marmotae. Values on the branch are bootstrap values out of 100 from 1000 replicates. Species and strain names are colour coded. Note that Shigella strains belong to E. coli. Salmonella Typhimurium strain LT2 is used as an outgroup.