Table 1.

Genomes list of phylogenetic analysis.

Strains	Lineage	Pathotype	Phylogeneticgroup	Host
MG1655	E. coli	Commensal	A	Human
HS	E. coli	Commensal	A	Human
SE11	E. coli	Commensal	B1	Human
IAI1	E. coli	Commensal	B1	Human
ED1a	E. coli	Commensal	B2	Human
Sakai	E. coli	EHEC	H	Human
EDL933	E. coli	EHEC	H	Food
UTI89	E. coli	UPEC	B2	Human
UPEC536	E. coli	UPEC	B2	Human
CFT073	E. coli	UPEC	B2	Human
APEC_O1	E. coli	APEC	B2	Chicken
UMN026	E. coli	UPEC	D	Human
IAI39	E. coli	UPEC	D	Human
TW10509	Escherichia clade I	Avirulent		Environment
TW09231	Escherichia clade III	Avirulent		Environment
TW09276	Escherichia clade III	Avirulent		Environment
H605	Escherichia clade IV	Avirulent		Environment
TW14182	Escherichia clade IV	Avirulent		Environment
TW11588	Escherichia clade IV	Avirulent		Environment
E1118	Escherichia clade V	Avirulent		Environment
TW09308	Escherichi aclade V	Avirulent		Environment
ATCC35469	E. fergusonii	Multiple		Human
TW08933	E. albertii	Serotype 7		Human
TW15818	E. albertii	Diarrheic		Human
B156	E. albertii	Avirulent		Human
301	Shigella flexneri	Diarrheic	S3	Human
Sd197	Shigella dysenteriae	Diarrheic	SD1	Human
Ss046	Shigella sonnei	Diarrheic	SS	Human
Sb227	Shigella boydii	Diarrheic	S1	Human
HT073016	E. marmotae	unknow		Marmot
HT080709	E. marmotae	unknow		Marmot
HT080711	E. marmotae	unknow		Marmot
HT072503	E. marmotae	unknow		Marmot
HT073105	E.marmotae	unknow		Marmot
HT080118	E. marmotae	unknow		Marmot
HT080401	E. marmotae	unknow		Marmot
LT2	Salmonella Typhimurium	Typhimurium	outgroup	Human