ROS	Reactive oxygen species
SOD	Superoxide dismutase
POD	Peroxidases
HS	Heat stress
MDA	Malondialdehyde
RNA-Seq	RNA sequencing
DEGs	Differentially expressed genes
ncRNAs	Non-coding RNAs
r1d	Recovery treatment for 1 d
r3d	Recovery treatment for 3 d
DE	Differentially expressed
GO	Gene Ontology
BP	Biological processes
CC	Cellular components
MF	Molecular functions
KEGG	Kyoto Encyclopedia of Genes and Genome
PHYA	Phytochrome A
PRR5	Pseudo-response regulator 5
PRR7	Pseudo-response regulator 7
TOC1	Pseudo-response regulator 1
CK2β	Casein kinase II subunit beta
GI	Gigantea
COP1	E3 ubiquitin-protein ligase RFWD2
CHE	Transcription factor TCP21 (protein CCA1 HIKING EXPEDITION)
CCA1	Circadian clock associated 1
LHY	MYB-related transcription factor LHY
CDF1	Dof zinc finger protein DOF5.5
CK2α	Casein kinase II subunit alpha
KO	KEGG orthology
Lhca1	Light-harvesting complex I chlorophyll a/b binding protein 1
Lhcb1	Light-harvesting complex II chlorophyll a/b binding protein 1
Lhcb2	Light-harvesting complex II chlorophyll a/b binding protein 2
Lhcb4	Light-harvesting complex II chlorophyll a/b binding protein 4
Lhcb7	Light-harvesting complex II chlorophyll a/b binding protein 7
PsbP	Photosystem II oxygen-evolving enhancer protein 2
PsbQ	Photosystem II oxygen-evolving enhancer protein 3
PsbW	Photosystem II PsbW protein
Psb28	Photosystem II 13kDa protein
PsaE	Photosystem I subunit IV
PsaG	Photosystem I subunit V
PsaO	Photosystem I subunit PsaO
PetF	ferredoxin
TFs	Transcription factors
ceRNA	Competing endogenous RNA
HSP	Heat shock protein
HSF	Heat shock factor
PIFs	Phytochrome interacting factors
C3H	Cinnamate 3-hydroxylase
NAC	NAM, ATAF, and CUC
sHSPs	Small HSPs
CuZn-SOD	Copper-zinc superoxide dismutase
MRE	MicroRNA response element
Ndufs4	NADH dehydrogenase (ubiquinone) Fe-S protein 4
Ndufs5	NADH dehydrogenase (ubiquinone) Fe-S protein 5
Ndufs6	NADH dehydrogenase (ubiquinone) Fe-S protein 6
Ndufs7	NADH dehydrogenase (ubiquinone) Fe-S protein 7
Ndufv1	NADH dehydrogenase (ubiquinone) flavoprotein 1
Ndufa2	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
Ndufa5	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5
Ndufa6	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 6
Ndufa8	NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 8
COX10	Heme o synthase
COX17	Cytochrome c oxidase assembly protein subunit 17
PXMP2	Peroxisomal membrane protein 2
MPV17	Protein Mpv17
ACAA1	Acetyl-CoA acyltransferase 1
FAR	Alcohol-forming fatty acyl-CoA reductase
AGT	Alanine-glyoxylate transaminase/serine-glyoxylate transaminase/serine-pyruvate Transaminase
AUX1	Auxin influx carrier (AUX1 LAX family)
ARF	Auxin response factor
GH3	Auxin responsive GH3 gene family
SAUR	SAUR family protein
A-ARR	Two-component response regulator ARR-A family
PYR/PYL	Abscisic acid receptor PYR/PYL family
PP2C	Protein phosphatase 2C
ABF	ABA responsive element binding factor
EBF1/2	EIN3-binding F-box protein
EIN3	Ethylene-insensitive protein 3
BSK	BR-signaling kinase
CYCD3	Cyclin D3, plant
JAZ	Jasmonate ZIM domain-containing protein