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. 2019 Jun 26;20(13):3121. doi: 10.3390/ijms20133121

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© 2019 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Normal mode analysis (NMA) of the TLR4/MD2 complex bound to HSP70 in the ADP (2KHO) or ATP (4B9Q) state. Structures were submitted to NMA in the web server iMODS and colored according to their estimated B-factor for deformability (A) using the software UCSF Chimera (version 1.12). The color scale ranges from blue (less flexible region) to red (more flexible region) in a logarithmic scale. The cumulative distribution function (B) shows the pattern of dispersion of deformability (d) throughout the docked conformations.