Table 4.

Significant and stable SNPs identified for Karnal bunt across at least two experiments (significant at p < 0.000).

SN	Marker	Allele	Chromosome	Physical Position	E1- 2017		E2- 2017		E3- 2018		E4- 2018
					Additve Effect	R2	Additive Effect	R2	Additive Effect	R2	Additive Effect	R2
1	12772856	C/T	1DL	470084827	−0.43	0.06	-	-	−2.59	0.06	-	-
2	1002872	A/C	2BS	175068236	-	-	-	-	−5.72	0.06	−6.29	0.04
3	1107259	A/G	2BS	176172344	-	-	-	-	−5.55	0.06	−6.48	0.06
4	1228074	A/G	2BL	731195296	-	-	-	-	−3.47	0.06	−1.25	0.05
5	6048838	T/C	2BL	692615259	−1.90	0.13	−4.64	0.15	−4.27	0.11	−4.96	0.20
6	3961245	T/C	2DL	586853396	-	-	−1.75	0.06	−1.54	0.05	-	-
7	3021116	A/C	4AL	656758037	-	-	-	-	0.75	0.06	1.80	0.07
8	1081667	A/G	4BL	648564812	−4.13	0.05	−2.96	0.05	-	-	-	-
9	1207347	G/A	5AS	36718388	−3.55	0.05	−4.05	0.07	-	-	-	-
10	2277102	T/C	5AL	503499615	-	-	0.46	0.06	−0.57	0.06	-	-
11	1079540	C/A	5BL	671473536	1.25	0.05	1.69	0.06	2.75	0.06	-	-
12	1083023	C/T	5BL	671487862	NaN	0.06	-	-	NaN	0.06	NaN	0.08
13	4909526	C/G	5BS	61706304	5.83	0.07	-	-	-	-	7.76	0.08
14	100180104	G/C	6AS	27649931	4.69	0.07	3.32	0.06	-	-	-	-
15	4394191	G/A	6BL	500595153	-	-	7.69	0.10	0.91	0.06	-	-
16	100182216	T/G	6BS	21209894	-	-	-	-	4.87	0.07	7.08	0.09
17	1130811	G/C	7BS	45306426	-	-	-	-	−1.58	0.05	−1.78	0.06
18	3026821	C/G	7DL	607297738	3.10	0.06	2.96	0.08	-	-	-	-