Table 1.
Datasets used to study effect of sequencing depth
| SRA Run ID | Species | Tissue Description | Platform | # of Spots | # of Bases | Date Published | End Length |
|---|---|---|---|---|---|---|---|
| SRR1047863 | Homo sapiens | post-mortem brain (dorsolateral prefrontal cortex / Brodmann area 46) | Illumina HiSeq 1000 | 258 733 827 | 52 264 233 054 | 2014-01-08 | 101 bp |
| SRR980471 | Homo sapiens | CD19+ primary cells, hispanic male age 37 | Illumina HiSeq 2000 | 263 034 155 | 39 981 191 560 | 2013-09-12 | 76 bp |
| SRR1732347 | Mus musculus | male brain age 8 weeks, strain C57BL/6 J | Illumina HiSeq 2000 | 354 274 087 | 71 563 365 574 | 2014-12-23 | 101 bp |
| SRR1509508 | Drosophila melanogaster | adult; strain: y; cn bw sp | Illumina HiSeq 2000 | 140 645 540 | 28 410 399 080 | 2014-07-09 | 101 bp |
| SRR1523365 | Caenorhabditis elegans | at least 100 adult worms | Illumina HiSeq 2000 | 228 557 939 | 45 711 587 800 | 2014-07-31 | 100 bp |
| SRR1178906 | Oryza sativa | panicle from O. sativa japonica (Nipponbare cultivar) | Illumina HiSeq 2000 | 207 489 217 | 41 497 843 400 | 2014-03-03 | 100 bp |
| DRR018424 | Arabidopsis thaliana | 4 day old seedlings | Illumina HiSeq 2000 | 192 531 285 | 38 891 319 570 | 2014-11-27 | 101 bp |
| SRR1061361 | Arabidopsis thaliana | leaves – when first flower open | Illumina HiSeq 2000 | 202 019 334 | 40 807 905 468 | 2015-07-22 | 101 bp |
All datasets were sourced from the NCBI and DDJB Sequence Read Archives