Table 1. Diatraea saccharalis genomic diversity estimates based on 1,331 SNP loci by sampling locations.
Location | N | A | AR | HO | HE | FIS |
---|---|---|---|---|---|---|
LaCocha_Co | 10 | 1859 | 1.13 | 0.1 | 0.13 | 0.244 |
LaCruz_Su | 5 | 1721 | 1.1 | 0.1 | 0.12 | 0.159 |
Jujuy_Su | 7 | 1866 | 1.13 | 0.11 | 0.14 | 0.222 |
Perga_Co | 2 | 1519 | 1.05 | 0.12 | 0.14 | 0.183 |
Qui_Co | 4 | 1552 | 0.98 | 0.07 | 0.13 | 0.475 |
Araras_Su | 2 | 1723 | 1.14 | 0.16 | 0.16 | 0.02 |
Goias_TBD | 4 | 1856 | 1.1 | 0.12 | 0.17 | 0.324 |
Jabo_Su | 52 | 2333 | 1.41 | 0.24 | 0.24 | 0.006 |
Morr_Co | 4 | 1910 | 1.16 | 0.13 | 0.17 | 0.243 |
MS_TBD | 9 | 2129 | 1.23 | 0.14 | 0.2 | 0.306 |
MT_TBD | 5 | 1818 | 1.12 | 0.11 | 0.15 | 0.225 |
PAf_Su | 3 | 1751 | 1.12 | 0.11 | 0.15 | 0.253 |
Parana_TBD | 3 | 1847 | 1.16 | 0.14 | 0.16 | 0.175 |
Pira_Co | 25 | 2118 | 1.32 | 0.19 | 0.19 | -0.009 |
Pira_Su | 22 | 2296 | 1.38 | 0.22 | 0.23 | 0.046 |
Rib_Su | 4 | 1916 | 1.11 | 0.14 | 0.18 | 0.246 |
Rondo_Co | 3 | 1634 | 1.03 | 0.11 | 0.16 | 0.347 |
SHG_Su | 4 | 1916 | 1.15 | 0.15 | 0.19 | 0.236 |
SP_TBD | 18 | 2264 | 1.21 | 0.13 | 0.23 | 0.423 |
ElNilo_Su | 4 | 1438 | 1.01 | 0.05 | 0.07 | 0.326 |
ElPais_Su | 2 | 1277 | 0.89 | 0.04 | 0.13 | 0.727 |
BGlade_Su | 9 | 1384 | 0.95 | 0.03 | 0.08 | 0.629 |
Louis_Su | 15 | 1526 | 1.03 | 0.06 | 0.09 | 0.33 |
Beaum_Su | 13 | 1556 | 1.07 | 0.08 | 0.09 | 0.149 |
Wesl_Su | 7 | 1472 | 1 | 0.06 | 0.09 | 0.361 |
N = Number of individuals, A = Number of alleles, AR = Allelic Richness, HO = Observed heterozygosity, HE = Expected heterozygosity, FIS = Inbreeding coefficient