Table 2.
Patienta | Frameshift insertion | Frameshift deletion | Frameshift substitution | Stopgain | Stoploss | Nonframeshift insertion | Nonframeshift deletion | Nonframeshift substitution | Missense SNVb | Synonymous SNVb | Unknown | Total |
---|---|---|---|---|---|---|---|---|---|---|---|---|
P0123 | 27 | 129 | 0 | 51 | 2 | 0 | 4 | 0 | 869 | 389 | 1 | 1,472 |
P0825 | 125 | 422 | 0 | 56 | 3 | 5 | 35 | 0 | 1,181 | 494 | 2 | 2,323 |
P0909 | 114 | 190 | 0 | 46 | 3 | 0 | 3 | 0 | 1,440 | 582 | 0 | 2,378 |
P0413 | 27 | 156 | 0 | 60 | 0 | 1 | 11 | 0 | 929 | 427 | 3 | 1,614 |
P0215 | 5 | 22 | 0 | 9 | 1 | 6 | 14 | 0 | 79 | 42 | 0 | 178 |
P0411 | 2 | 6 | 0 | 6 | 0 | 1 | 2 | 0 | 68 | 29 | 0 | 114 |
P0701 | 2 | 3 | 0 | 11 | 0 | 2 | 0 | 0 | 102 | 46 | 0 | 166 |
P1012 | 4 | 11 | 0 | 10 | 0 | 0 | 2 | 0 | 180 | 63 | 0 | 270 |
P1207 | 2 | 5 | 0 | 3 | 0 | 1 | 7 | 0 | 59 | 36 | 0 | 113 |
P1212 | 6 | 5 | 0 | 4 | 0 | 2 | 3 | 0 | 135 | 52 | 0 | 207 |
P1228 | 3 | 7 | 0 | 7 | 0 | 0 | 1 | 0 | 88 | 46 | 0 | 152 |
P0309 | 0 | 1 | 0 | 2 | 0 | 0 | 0 | 0 | 40 | 15 | 0 | 58 |
Somatic mutations were detected by variant caller Strelka and were annotated with ANNOVAR.
aMSI pateints are labelled in bold.
bSNV,single nucleotide variant.