Online-only Table 3.
DNA fragment sizes of short tandem repeat loci from tested patients in microsatellite instability testing experiment.
| Normal DNA | Tumour DNA | |||||||
|---|---|---|---|---|---|---|---|---|
| Patienta | Markerb | Size 1 | Size 2 | Size 3 | Size 1 | Size 2 | Size 3 | Size 4 |
| P0909 | NR21 | 106.09 | 106.02 | 96.76 | ||||
| Bat26 | 177.31 | 166.03 | 161.95 | 177.4 | ||||
| Bat25 | 118.5 | 118.47 | 111.84 | |||||
| NR24 | 134.3 | 134.2 | 127.87 | |||||
| Mono27 | 170.33 | 172.23 | 170.42 | 160.49 | 172.2 | |||
| PentaC | 230.4 | 230.4 | 204.36 | |||||
| PentaD | 172.39 | 176.99 | 177.08 | 172.37 | 181.97 | |||
| P0413 | NR21 | 107.09 | 103.35 | 98.66 | 107.16 | |||
| Bat26 | 178.46 | 172.26 | 169.19 | 178.38 | ||||
| Bat25 | 119.43 | 119.44 | 114.73 | |||||
| NR24 | 134.2 | 134.2 | 127.9 | |||||
| Mono27 | 172.23 | 172.17 | 165.05 | |||||
| PentaC | 230.5 | 251.38 | 230.46 | 225.27 | 240.89 | 251.35 | ||
| PentaD | 181.93 | 191.65 | 191.65 | 181.93 | ||||
| P0825 | NR21 | 105.55 | 105.57 | 103.69 | 98.12 | |||
| Bat26 | 178 | 178 | 166.76 | 163.62 | ||||
| Bat25 | 119.71 | 119.8 | 114.19 | 111.42 | ||||
| NR24 | 134.06 | 134.06 | 128.7 | 126.06 | ||||
| Mono27 | 172.95 | 173.05 | 164.95 | 163.24 | ||||
| PentaC | 230.28 | 230.29 | ||||||
| PentaD | 176.57 | 186.2 | 176.67 | 186.33 | ||||
| P0123 | NR21 | 106.67 | 101.93 | 100.1 | 106.66 | |||
| Bat26 | 178.16 | 173.98 | 167.87 | 178.15 | ||||
| Bat25 | 118.96 | 119.04 | 112.53 | |||||
| NR24 | 134.03 | 134.08 | 130.5 | |||||
| Mono27 | 173.09 | 173.06 | 167.69 | |||||
| PentaC | 230.26 | 230.26 | ||||||
| PentaD | 176.77 | 196.07 | 196.03 | 176.76 | ||||
| P1212 | NR21 | 106.11 | 106.2 | |||||
| Bat26 | 178.46 | 178.37 | ||||||
| Bat25 | 119.51 | 119.49 | ||||||
| NR24 | 133.21 | 133.37 | ||||||
| Mono27 | 169.55 | 169.43 | ||||||
| PentaC | 225.37 | 230.56 | 225.3 | 230.42 | ||||
| PentaD | 176.93 | 206.02 | 177.07 | 206.15 | ||||
| P0215 | NR21 | 105.97 | 105.93 | |||||
| Bat26 | 178.11 | 178.12 | ||||||
| Bat25 | 119.28 | 119.11 | ||||||
| NR24 | 133.66 | 133.47 | ||||||
| Mono27 | 173.29 | 173.17 | ||||||
| PentaC | 219.8 | 230.25 | 219.8 | 230.17 | ||||
| PentaD | 176.39 | 190.96 | 176.25 | 190.78 | ||||
| P0701 | NR21 | 106.99 | 107.16 | |||||
| Bat26 | 177.31 | 177.26 | ||||||
| Bat25 | 119.5 | 119.33 | ||||||
| NR24 | 133.32 | 133.36 | ||||||
| Mono27 | 172.23 | 172.27 | ||||||
| PentaC | 220.01 | 230.42 | 219.99 | 230.41 | ||||
| PentaD | 191.54 | 191.64 | ||||||
| P1012 | NR21 | 106.01 | 106.09 | |||||
| Bat26 | 177.4 | 177.44 | ||||||
| Bat25 | 119.32 | 119.33 | ||||||
| NR24 | 133.31 | 133.32 | ||||||
| Mono27 | 172.2 | 172.17 | ||||||
| PentaC | 230.52 | 235.67 | 230.44 | 235.62 | ||||
| PentaD | 191.64 | 191.62 | ||||||
| P1207 | NR21 | 105.96 | 106.09 | |||||
| Bat26 | 178.4 | 178.4 | ||||||
| Bat25 | 119.33 | 119.33 | ||||||
| NR24 | 133.43 | 133.26 | ||||||
| Mono27 | 170.41 | 172.33 | 170.4 | 172.16 | ||||
| PentaC | 230.53 | 235.74 | 230.42 | 235.61 | ||||
| PentaD | 172.49 | 191.71 | 172.32 | 191.71 | ||||
MSI pateints are labelled in bold.
PentaC and PantaD, two much less variable pentanucleotide repeats.