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. 2019 Jul 18;10:1647. doi: 10.3389/fmicb.2019.01647

TABLE 1.

Universal and fungal specific primers for the dual DNAbarcoding scheme.

Barcode Primer name Sequence References
Primary barcode ITS1 5′ TCCGTAGGTGAACCTGCGG 3′ White et al.,1990
ITS2 5′ GCTGCGTTCTTCATCGATGC 3′ White et al.,1990
ITS3 5′ GCATCGATGAAGAACGCAGC 3′ White et al.,1990
ITS4 5′ TCCTCCGCTTATTGATATGC 3′ White et al.,1990
ITS5 5′ GGAAGTAAAAGTCGTAACAAGG 3′ White et al.,1990
ITS1F 5′ CTTGGTCATTTAGAGGAAGTAA 3′ Gardes and Bruns,1993
IT2 5′ CCTCCGCTTATTGATATGCTTAGG 3′ Beguin et al.,2012
SR6R 5′ AAGTATAAGTCGTAACAAGG 3′ Vilgalys and Hester,1990
LR1 5′ GGTTGGTTTCTTTCCT 3′ Vilgalys and Hester,1990
V9D 5′ TTAAGTCCCTGCCCTTTGTA 3′ Gerrits van den Ende and de Hoog,1999
V9G 5′ TACGTCCCTGCCCTTTGTA 3′ Gerrits van den Ende and de Hoog,1999
LS266 5′ GCATTCCCAAACAACTCGACTC 3′ Gerrits van den Ende and de Hoog,1999
NL4b 5′ GGATTCTCACCCTCTATGAC 3′ O’Donnell,1993
Secondary barcode EF1-1002F 5′ TTCATCAAGAACATGAT 3′ Stielow et al.,2015
EF1-1018F 5′ GAYTTCATCAAGAACATGAT 3′ Stielow et al.,2015
EF1-1620R 5′ GACGTTGAADCCRACRTTGTC 3′ Stielow et al.,2015
EF1-1688R 5′ GCTATCATCACAATGGACGTTCTTGGAG 3′ Stielow et al.,2015
EF1-983F 5′ GCYCCYGGHCAYCGTGAYTTYAT 3′ Rehner and Buckley,2005
EF1-1567R 5′ ACHGTRCCRATACCACCRATCTT 3′ Rehner and Buckley,2005