TABLE 1.
Universal and fungal specific primers for the dual DNAbarcoding scheme.
Barcode | Primer name | Sequence | References |
Primary barcode | ITS1 | 5′ TCCGTAGGTGAACCTGCGG 3′ | White et al.,1990 |
ITS2 | 5′ GCTGCGTTCTTCATCGATGC 3′ | White et al.,1990 | |
ITS3 | 5′ GCATCGATGAAGAACGCAGC 3′ | White et al.,1990 | |
ITS4 | 5′ TCCTCCGCTTATTGATATGC 3′ | White et al.,1990 | |
ITS5 | 5′ GGAAGTAAAAGTCGTAACAAGG 3′ | White et al.,1990 | |
ITS1F | 5′ CTTGGTCATTTAGAGGAAGTAA 3′ | Gardes and Bruns,1993 | |
IT2 | 5′ CCTCCGCTTATTGATATGCTTAGG 3′ | Beguin et al.,2012 | |
SR6R | 5′ AAGTATAAGTCGTAACAAGG 3′ | Vilgalys and Hester,1990 | |
LR1 | 5′ GGTTGGTTTCTTTCCT 3′ | Vilgalys and Hester,1990 | |
V9D | 5′ TTAAGTCCCTGCCCTTTGTA 3′ | Gerrits van den Ende and de Hoog,1999 | |
V9G | 5′ TACGTCCCTGCCCTTTGTA 3′ | Gerrits van den Ende and de Hoog,1999 | |
LS266 | 5′ GCATTCCCAAACAACTCGACTC 3′ | Gerrits van den Ende and de Hoog,1999 | |
NL4b | 5′ GGATTCTCACCCTCTATGAC 3′ | O’Donnell,1993 | |
Secondary barcode | EF1-1002F | 5′ TTCATCAAGAACATGAT 3′ | Stielow et al.,2015 |
EF1-1018F | 5′ GAYTTCATCAAGAACATGAT 3′ | Stielow et al.,2015 | |
EF1-1620R | 5′ GACGTTGAADCCRACRTTGTC 3′ | Stielow et al.,2015 | |
EF1-1688R | 5′ GCTATCATCACAATGGACGTTCTTGGAG 3′ | Stielow et al.,2015 | |
EF1-983F | 5′ GCYCCYGGHCAYCGTGAYTTYAT 3′ | Rehner and Buckley,2005 | |
EF1-1567R | 5′ ACHGTRCCRATACCACCRATCTT 3′ | Rehner and Buckley,2005 |