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. Author manuscript; available in PMC: 2019 Jul 25.
Published in final edited form as: J Biomed Inform. 2017 Jul 8;72:85–95. doi: 10.1016/j.jbi.2017.07.006

Table 3.

Validation set performances of the LSTM models with mean pooling word embedding trained on medical corpus. The hyper-parameters used by each model are the same as specified in Table 2. The numbers in parentheses are the standard deviations of the corresponding metrics across the hyper-parameter grids.

System Problem-Treatment (TrP) Relations Problem-Test (TeP) Relations Problem-Problem (PP) Relations
R P F R P F R P F
Segment LSTM mean 0.788 (0.019) 0.767 (0.022) 0.777 (0.009) 0.826 (0.019) 0.843 (0.014) 0.834 (0.008) 0.784 (0.029) 0.784 (0.032) 0.784 (0.017)
Sentence LSTM mean 0.783 (0.033) 0.770 (0.016) 0.776 (0.011) 0.846 (0.019) 0.806 (0.022) 0.825 (0.008) 0.853 (0.010) 0.818 (0.005) 0.835 (0.004)